Wall clock time and date at job start Mon Mar 30 2020 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47333 * 71.66796 * 3 2 1 5 5 C 1.37094 * 120.00149 * 263.92453 * 4 3 2 6 6 H 1.08003 * 119.99469 * 199.75542 * 5 4 3 7 7 C 1.38942 * 120.00024 * 19.75918 * 5 4 3 8 8 N 1.31413 * 120.00254 * 21.74402 * 7 5 4 9 9 Si 1.86801 * 119.99849 * 201.74439 * 7 5 4 10 10 H 1.48495 * 109.47416 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46986 * 120.00228 * 9 7 5 12 12 H 1.48508 * 109.47200 * 240.00070 * 9 7 5 13 13 C 1.34784 * 119.99539 * 83.92404 * 4 3 2 14 14 O 1.21291 * 119.99526 * 179.97438 * 13 4 3 15 15 C 1.50694 * 120.00202 * 0.02562 * 13 4 3 16 16 C 1.50701 * 109.47154 * 180.02562 * 15 13 4 17 17 C 1.38243 * 119.98254 * 269.72279 * 16 15 13 18 18 C 1.38217 * 120.01416 * 179.72801 * 17 16 15 19 19 C 1.38357 * 119.98175 * 0.54384 * 18 17 16 20 20 Cl 1.73598 * 120.01186 * 179.70509 * 19 18 17 21 21 C 1.38355 * 119.97234 * 359.72909 * 19 18 17 22 22 C 1.38206 * 119.99008 * 0.02562 * 21 19 18 23 23 H 4.40643 * 5.51473 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46944 * 311.66845 * 3 2 1 25 25 H 1.08997 * 109.46808 * 191.67399 * 3 2 1 26 26 H 0.96995 * 120.00066 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47447 * 59.99513 * 15 13 4 28 28 H 1.09000 * 109.46747 * 299.99599 * 15 13 4 29 29 H 1.08001 * 119.99586 * 359.97438 * 17 16 15 30 30 H 1.07994 * 120.00676 * 180.27106 * 18 17 16 31 31 H 1.08000 * 120.00160 * 179.97438 * 21 19 18 32 32 H 1.08002 * 119.99657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4335 -1.3111 5 6 3.4821 -1.7441 -1.5135 6 1 4.1256 -2.0108 -2.3389 7 6 3.0066 -2.7293 -0.6568 8 7 1.9255 -2.5125 0.0581 9 14 3.9042 -4.3619 -0.5212 10 1 5.0833 -4.3550 -1.4238 11 1 4.3536 -4.5648 0.8796 12 1 2.9888 -5.4640 -0.9120 13 6 3.2423 0.4556 -2.3183 14 8 3.6473 0.0962 -3.4037 15 6 2.8608 1.8963 -2.0956 16 6 3.0719 2.6744 -3.3688 17 6 4.2896 3.2813 -3.6138 18 6 4.4857 3.9904 -4.7839 19 6 3.4593 4.1022 -5.7049 20 17 3.7024 4.9990 -7.1713 21 6 2.2391 3.4993 -5.4566 22 6 2.0458 2.7863 -4.2885 23 1 -1.0500 0.0001 -0.0002 24 1 3.0096 -0.6824 0.7677 25 1 3.0088 1.0072 0.2079 26 1 1.5933 -3.2003 0.6559 27 1 3.4806 2.3183 -1.3045 28 1 1.8118 1.9536 -1.8050 29 1 5.0891 3.1981 -2.8925 30 1 5.4384 4.4608 -4.9771 31 1 1.4374 3.5866 -6.1750 32 1 1.0932 2.3159 -4.0943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302283608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:33 Heat of formation + Delta-G solvation = 47.403019 kcal Electronic energy + Delta-G solvation = -18358.288190 eV Core-core repulsion = 15311.768374 eV Total energy + Delta-G solvation = -3046.519817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49796 -38.27705 -36.38786 -35.16970 -32.52946 -31.81639 -31.23273 -30.87781 -27.48643 -26.34431 -24.38766 -22.65465 -21.52576 -19.07224 -17.91205 -16.87485 -16.65589 -16.17348 -15.46632 -15.07216 -14.63475 -14.18849 -14.05223 -13.35712 -13.30571 -13.24805 -12.75731 -12.50230 -12.24230 -11.73917 -11.61990 -11.25899 -11.14518 -11.12800 -10.98410 -10.67980 -10.50121 -10.32635 -9.41634 -9.28365 -8.95621 -8.83399 -8.61344 -8.22218 -7.88110 -6.35772 -3.89694 1.35096 1.50482 2.23001 3.11534 3.24280 3.30748 3.62399 3.80983 3.89158 4.00127 4.17786 4.91381 4.92169 5.02213 5.03538 5.13789 5.41666 5.48747 5.53970 5.74180 5.83102 5.87364 6.03949 6.15852 6.26214 6.37941 6.42705 6.66263 6.81542 6.97716 7.00172 7.54181 8.02994 8.39339 8.76676 9.10893 9.32097 9.87390 10.64903 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.004188 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.401575 B = 6684.733971 C = 7222.308313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.115 4.115 3 C 0.232 3.768 4 N -0.441 5.441 5 C -0.316 4.316 6 H 0.103 0.897 7 C 0.033 3.967 8 N -0.861 5.861 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.455 3.545 14 O -0.574 6.574 15 C -0.103 4.103 16 C -0.036 4.036 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.043 4.043 20 Cl -0.086 7.086 21 C -0.110 4.110 22 C -0.094 4.094 23 H 0.199 0.801 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.267 0.733 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 12.217 -2.309 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.117 4.117 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.243 3.757 14 O -0.457 6.457 15 C -0.143 4.143 16 C -0.036 4.036 17 C -0.115 4.115 18 C -0.129 4.129 19 C -0.070 4.070 20 Cl -0.057 7.057 21 C -0.128 4.128 22 C -0.113 4.113 23 H 0.216 0.784 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.687 11.981 -2.836 12.332 hybrid contribution -0.079 -0.996 0.124 1.007 sum 0.608 10.986 -2.712 11.332 Atomic orbital electron populations 1.24274 0.95374 1.06158 1.01898 1.23158 0.94349 0.95528 0.98661 1.18226 0.84331 0.98188 0.88434 1.43701 1.56186 1.08486 1.07598 1.19669 1.28273 0.81208 1.15145 0.87891 1.25289 0.94991 0.99421 0.97499 1.70090 1.17922 1.35078 1.26724 0.85994 0.79809 0.81580 0.78118 1.19205 1.20603 1.20899 1.19872 0.84539 0.86670 0.84628 1.90559 1.50510 1.80204 1.24462 1.20734 1.03575 0.94660 0.95305 1.19570 0.93491 0.94779 0.95784 1.20949 0.96823 0.96812 0.96879 1.20927 0.98112 1.00327 0.93541 1.20820 0.96320 1.00541 0.89295 1.98338 1.97098 1.74209 1.36096 1.20938 0.95890 0.98096 0.97920 1.20975 0.99591 0.97676 0.93016 0.78402 0.87567 0.91876 0.92209 0.89235 0.88923 0.85320 0.85333 0.85329 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.12 19.25 29.55 0.57 -4.55 16 2 C -0.12 -2.46 10.75 -37.12 -0.40 -2.86 16 3 C 0.23 4.85 4.91 -6.83 -0.03 4.81 16 4 N -0.44 -10.70 2.60 -117.94 -0.31 -11.00 16 5 C -0.32 -8.48 9.28 -14.94 -0.14 -8.62 16 6 H 0.10 2.94 7.42 -52.48 -0.39 2.55 16 7 C 0.03 0.83 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.13 9.59 55.50 0.53 -21.59 16 9 Si 0.92 20.12 29.60 -169.99 -5.03 15.09 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 C 0.45 10.55 7.56 -10.98 -0.08 10.46 16 14 O -0.57 -15.48 15.70 5.55 0.09 -15.39 16 15 C -0.10 -1.78 4.44 -29.04 -0.13 -1.91 16 16 C -0.04 -0.59 4.37 -104.62 -0.46 -1.05 16 17 C -0.10 -1.45 9.70 -39.59 -0.38 -1.83 16 18 C -0.11 -1.53 9.83 -39.55 -0.39 -1.92 16 19 C -0.04 -0.61 6.32 -39.49 -0.25 -0.86 16 20 Cl -0.09 -1.07 28.96 -51.86 -1.50 -2.57 16 21 C -0.11 -1.57 9.83 -39.55 -0.39 -1.96 16 22 C -0.09 -1.48 9.70 -39.59 -0.38 -1.87 16 23 H 0.20 3.19 7.80 -54.09 -0.42 2.77 16 24 H 0.11 2.36 6.60 -51.93 -0.34 2.01 16 25 H 0.06 1.06 6.69 -51.93 -0.35 0.72 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.09 1.31 7.36 -51.93 -0.38 0.92 16 28 H 0.09 1.54 7.43 -51.93 -0.39 1.15 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 302.40 15.07 4.56 4.56 Total: -1.00 -30.61 302.40 -7.31 -37.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -3.10 Total: 4.40 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.55 Total: -11.41 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.23 Total: -32.60 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.61 -7.31 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302283608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.323 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds