Wall clock time and date at job start Mon Mar 30 2020 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47333 * 71.66796 * 3 2 1 5 5 C 1.37094 * 120.00149 * 263.92453 * 4 3 2 6 6 H 1.08003 * 119.99469 * 199.75542 * 5 4 3 7 7 C 1.38942 * 120.00024 * 19.75918 * 5 4 3 8 8 N 1.31413 * 120.00254 * 21.74402 * 7 5 4 9 9 Si 1.86801 * 119.99849 * 201.74439 * 7 5 4 10 10 H 1.48495 * 109.47416 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46986 * 120.00228 * 9 7 5 12 12 H 1.48508 * 109.47200 * 240.00070 * 9 7 5 13 13 C 1.34784 * 119.99539 * 83.92404 * 4 3 2 14 14 O 1.21291 * 119.99526 * 179.97438 * 13 4 3 15 15 C 1.50694 * 120.00202 * 0.02562 * 13 4 3 16 16 C 1.50701 * 109.47154 * 180.02562 * 15 13 4 17 17 C 1.38243 * 119.98254 * 269.72279 * 16 15 13 18 18 C 1.38217 * 120.01416 * 179.72801 * 17 16 15 19 19 C 1.38357 * 119.98175 * 0.54384 * 18 17 16 20 20 Cl 1.73598 * 120.01186 * 179.70509 * 19 18 17 21 21 C 1.38355 * 119.97234 * 359.72909 * 19 18 17 22 22 C 1.38206 * 119.99008 * 0.02562 * 21 19 18 23 23 H 4.40643 * 5.51473 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46944 * 311.66845 * 3 2 1 25 25 H 1.08997 * 109.46808 * 191.67399 * 3 2 1 26 26 H 0.96995 * 120.00066 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47447 * 59.99513 * 15 13 4 28 28 H 1.09000 * 109.46747 * 299.99599 * 15 13 4 29 29 H 1.08001 * 119.99586 * 359.97438 * 17 16 15 30 30 H 1.07994 * 120.00676 * 180.27106 * 18 17 16 31 31 H 1.08000 * 120.00160 * 179.97438 * 21 19 18 32 32 H 1.08002 * 119.99657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4335 -1.3111 5 6 3.4821 -1.7441 -1.5135 6 1 4.1256 -2.0108 -2.3389 7 6 3.0066 -2.7293 -0.6568 8 7 1.9255 -2.5125 0.0581 9 14 3.9042 -4.3619 -0.5212 10 1 5.0833 -4.3550 -1.4238 11 1 4.3536 -4.5648 0.8796 12 1 2.9888 -5.4640 -0.9120 13 6 3.2423 0.4556 -2.3183 14 8 3.6473 0.0962 -3.4037 15 6 2.8608 1.8963 -2.0956 16 6 3.0719 2.6744 -3.3688 17 6 4.2896 3.2813 -3.6138 18 6 4.4857 3.9904 -4.7839 19 6 3.4593 4.1022 -5.7049 20 17 3.7024 4.9990 -7.1713 21 6 2.2391 3.4993 -5.4566 22 6 2.0458 2.7863 -4.2885 23 1 -1.0500 0.0001 -0.0002 24 1 3.0096 -0.6824 0.7677 25 1 3.0088 1.0072 0.2079 26 1 1.5933 -3.2003 0.6559 27 1 3.4806 2.3183 -1.3045 28 1 1.8118 1.9536 -1.8050 29 1 5.0891 3.1981 -2.8925 30 1 5.4384 4.4608 -4.9771 31 1 1.4374 3.5866 -6.1750 32 1 1.0932 2.3159 -4.0943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302283608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:33 Heat of formation + Delta-G solvation = 31.516734 kcal Electronic energy + Delta-G solvation = -18358.977071 eV Core-core repulsion = 15311.768374 eV Total energy + Delta-G solvation = -3047.208698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91683 -39.76640 -37.47908 -36.96892 -34.18579 -33.28601 -32.97775 -31.99039 -28.96602 -27.97752 -26.17101 -23.77504 -22.82121 -20.71222 -19.64867 -18.38885 -18.00366 -17.90906 -16.72013 -16.50048 -16.30573 -15.79807 -15.65931 -14.63292 -14.48065 -14.45373 -14.28207 -14.09541 -13.87782 -13.51853 -13.05543 -12.82066 -12.52091 -12.36958 -12.27903 -12.25801 -12.10293 -11.73879 -11.14625 -11.05934 -10.62707 -10.33796 -9.95234 -9.78337 -9.48141 -8.29610 -5.91042 0.18881 0.38340 1.15715 1.35796 1.43793 1.56267 1.92884 2.17410 2.35408 2.41422 2.64980 3.07027 3.34530 3.79614 3.82870 3.91791 3.99236 4.20710 4.31767 4.40533 4.60177 4.64419 4.73518 4.85346 4.98020 5.03720 5.26244 5.26534 5.45880 5.49968 5.63594 5.86314 6.10643 6.47710 7.17817 7.19243 7.45655 8.03098 8.68559 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.004188 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.401575 B = 6684.733971 C = 7222.308313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.154 4.154 3 C 0.233 3.767 4 N -0.454 5.454 5 C -0.350 4.350 6 H 0.072 0.928 7 C 0.005 3.995 8 N -0.870 5.870 9 Si 0.978 3.022 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.283 1.283 13 C 0.447 3.553 14 O -0.622 6.622 15 C -0.087 4.087 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.049 4.049 20 Cl -0.070 7.070 21 C -0.113 4.113 22 C -0.109 4.109 23 H 0.231 0.769 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.271 0.729 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 13.200 -1.888 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.172 5.172 5 C -0.478 4.478 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.507 5.507 9 Si 0.803 3.197 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.237 3.763 14 O -0.508 6.508 15 C -0.127 4.127 16 C -0.060 4.060 17 C -0.122 4.122 18 C -0.130 4.130 19 C -0.076 4.076 20 Cl -0.042 7.042 21 C -0.132 4.132 22 C -0.128 4.128 23 H 0.247 0.753 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.445 12.985 -2.382 13.209 hybrid contribution -0.049 -1.262 -0.076 1.265 sum 0.396 11.723 -2.458 11.984 Atomic orbital electron populations 1.25116 0.96349 1.04701 1.00239 1.23446 0.95005 0.96914 1.00150 1.18318 0.84556 0.99774 0.86292 1.43899 1.56276 1.07888 1.09140 1.19522 1.29446 0.83303 1.15528 0.91042 1.25904 0.95295 1.01915 0.96721 1.70173 1.18111 1.35915 1.26513 0.85113 0.78304 0.77795 0.78496 1.20035 1.18941 1.20876 1.20835 0.82982 0.88787 0.83663 1.90515 1.52393 1.81586 1.26344 1.20618 1.04443 0.90628 0.96982 1.19655 0.94594 0.95856 0.95930 1.21187 0.96652 0.96630 0.97715 1.21214 0.99037 0.99798 0.92955 1.21003 0.96323 1.00327 0.89908 1.98343 1.97029 1.73721 1.35071 1.21155 0.96685 0.97585 0.97772 1.21125 0.99738 0.98265 0.93634 0.75275 0.89346 0.87815 0.91928 0.86203 0.88081 0.83880 0.83032 0.83502 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.28 19.25 74.32 1.43 -7.85 16 2 C -0.15 -6.40 10.75 31.13 0.33 -6.07 16 3 C 0.23 9.64 4.91 84.57 0.42 10.05 16 4 N -0.45 -22.30 2.60 -645.43 -1.68 -23.97 16 5 C -0.35 -19.38 9.28 84.04 0.78 -18.60 16 6 H 0.07 4.31 7.42 -2.91 -0.02 4.29 16 7 C 0.01 0.28 4.83 84.92 0.41 0.69 16 8 N -0.87 -44.54 9.59 21.66 0.21 -44.33 16 9 Si 0.98 41.57 29.60 68.60 2.03 43.60 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.45 20.97 7.56 87.65 0.66 21.64 16 14 O -0.62 -34.55 15.70 -3.06 -0.05 -34.60 16 15 C -0.09 -2.94 4.44 29.10 0.13 -2.81 16 16 C -0.06 -1.93 4.37 -19.86 -0.09 -2.02 16 17 C -0.10 -2.98 9.70 22.27 0.22 -2.76 16 18 C -0.11 -2.90 9.83 22.29 0.22 -2.68 16 19 C -0.05 -1.31 6.32 22.33 0.14 -1.16 16 20 Cl -0.07 -1.62 28.96 -2.72 -0.08 -1.70 16 21 C -0.11 -3.11 9.83 22.29 0.22 -2.89 16 22 C -0.11 -3.38 9.70 22.26 0.22 -3.16 16 23 H 0.23 6.74 7.80 -4.42 -0.03 6.70 16 24 H 0.09 3.93 6.60 -2.39 -0.02 3.91 16 25 H 0.10 3.32 6.69 -2.39 -0.02 3.30 16 26 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 27 H 0.12 3.23 7.36 -2.39 -0.02 3.22 16 28 H 0.10 3.23 7.43 -2.39 -0.02 3.21 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -66.82 302.40 6.66 -60.17 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.13 Total: 18.46 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 5.09 Total: -17.63 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.47 Total: -68.30 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.60 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -66.82 6.66 -60.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302283608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.685 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds