Wall clock time and date at job start Mon Mar 30 2020 01:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 N 1.65595 * 104.44822 * 179.97438 * 11 10 9 15 15 C 1.46502 * 120.00375 * 270.00044 * 14 11 10 16 16 C 1.50699 * 109.47032 * 94.99982 * 15 14 11 17 17 O 1.20831 * 120.00101 * 0.02562 * 16 15 14 18 18 O 1.34233 * 120.00009 * 180.02562 * 16 15 14 19 19 C 1.46507 * 119.99897 * 90.00160 * 14 11 10 20 20 C 1.53000 * 117.49627 * 188.62154 * 19 14 11 21 21 C 1.52999 * 117.49777 * 120.00045 * 19 14 11 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47337 * 215.00265 * 15 14 11 28 28 H 1.08997 * 109.47133 * 335.00040 * 15 14 11 29 29 H 0.96700 * 116.99637 * 180.02562 * 18 16 15 30 30 H 1.08996 * 115.54658 * 334.33105 * 19 14 11 31 31 H 1.08995 * 117.50536 * 0.02562 * 20 19 14 32 32 H 1.09008 * 117.49559 * 145.02148 * 20 19 14 33 33 H 1.08997 * 117.49644 * 214.98306 * 21 19 14 34 34 H 1.08998 * 117.49852 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5201 -6.3927 0.0005 15 6 3.0422 -6.9058 -1.2685 16 6 4.2890 -6.1465 -1.6425 17 8 4.6997 -5.2672 -0.9227 18 8 4.9433 -6.4469 -2.7754 19 6 3.0439 -6.9057 1.2690 20 6 4.2680 -7.8216 1.2090 21 6 2.8927 -8.4035 1.5417 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 3.2795 -7.9644 -1.1624 28 1 2.2914 -6.7783 -2.0484 29 1 5.7382 -5.9327 -2.9728 30 1 2.9627 -6.2285 2.1192 31 1 4.6839 -8.0422 0.2260 32 1 4.9926 -7.7471 2.0201 33 1 2.7123 -8.7119 2.5714 34 1 2.4031 -9.0073 0.7775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309681277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:42 Heat of formation + Delta-G solvation = -161.052293 kcal Electronic energy + Delta-G solvation = -20360.311262 eV Core-core repulsion = 16999.486931 eV Total energy + Delta-G solvation = -3360.824331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33004 -39.04593 -38.31733 -37.13470 -36.99937 -35.93234 -34.42561 -33.16139 -29.26166 -27.61646 -23.69199 -23.50872 -23.24163 -22.11947 -19.88172 -19.38455 -19.11335 -18.58076 -17.83719 -17.50214 -16.91112 -16.65488 -16.57356 -16.32567 -15.63150 -15.17372 -14.55044 -14.24321 -13.89169 -13.74265 -13.64508 -13.30670 -13.27350 -12.98684 -12.86900 -12.82267 -12.70514 -12.47529 -12.30831 -12.26889 -12.13409 -11.78814 -11.60470 -11.36875 -11.10137 -10.68325 -9.90183 -8.29397 -6.43347 -0.84823 1.17914 1.37498 1.38473 1.40497 1.52239 2.13394 2.35413 2.67440 2.95517 3.03273 3.06372 3.48781 3.78817 3.97912 4.02950 4.09722 4.10725 4.24903 4.30726 4.44543 4.70533 4.79730 4.99764 5.13730 5.22238 5.23692 5.26627 5.43649 5.63218 5.66030 6.04043 6.69201 6.99277 7.26559 8.83135 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.005600 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.151500 B = 4998.875207 C = 5519.301119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.580 4.580 11 S 2.619 3.381 12 O -0.978 6.978 13 O -0.982 6.982 14 N -0.951 5.951 15 C 0.111 3.889 16 C 0.454 3.546 17 O -0.529 6.529 18 O -0.508 6.508 19 C 0.050 3.950 20 C -0.163 4.163 21 C -0.176 4.176 22 H 0.269 0.731 23 H 0.009 0.991 24 H 0.010 0.990 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.428 0.572 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.531 -18.399 -1.870 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.717 3.283 12 O -0.968 6.968 13 O -0.972 6.972 14 N -0.785 5.785 15 C -0.015 4.015 16 C 0.295 3.705 17 O -0.418 6.418 18 O -0.321 6.321 19 C -0.056 4.056 20 C -0.202 4.202 21 C -0.215 4.215 22 H 0.078 0.922 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.149 0.851 26 H 0.144 0.856 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.290 0.710 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.207 -18.472 -1.605 21.166 hybrid contribution 1.187 1.881 -0.113 2.227 sum 11.395 -16.591 -1.718 20.200 Atomic orbital electron populations 1.70097 1.07921 1.28367 1.50753 1.26094 0.95913 1.03748 0.94226 0.85260 0.78878 0.77967 0.78122 1.18523 1.19933 1.19946 1.21477 0.93648 0.91001 1.51751 0.91494 1.18838 0.93430 0.92959 0.96454 1.30337 1.12282 1.17179 1.11408 1.04717 0.74562 0.75861 0.73168 1.93510 1.72067 1.85223 1.45999 1.93495 1.72089 1.85460 1.46206 1.56882 1.56397 1.54931 1.10290 1.21133 0.92506 1.01337 0.86551 1.24402 0.85924 0.81830 0.78387 1.90792 1.67214 1.31565 1.52196 1.84462 1.43883 1.63332 1.40445 1.21680 1.03907 0.94252 0.85733 1.23377 0.91320 1.01101 1.04362 1.23544 0.99157 0.94292 1.04511 0.92223 0.97308 0.97213 0.85115 0.85620 0.81802 0.83978 0.71003 0.85378 0.87812 0.86669 0.86625 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.58 -24.65 5.65 71.98 0.41 -24.24 16 11 S 2.62 97.68 5.43 -56.49 -0.31 97.37 16 12 O -0.98 -41.31 17.15 -127.65 -2.19 -43.50 16 13 O -0.98 -40.01 16.53 -127.65 -2.11 -42.12 16 14 N -0.95 -25.04 2.54 -497.40 -1.27 -26.30 16 15 C 0.11 2.20 5.53 85.63 0.47 2.67 16 16 C 0.45 9.77 7.75 71.24 0.55 10.32 16 17 O -0.53 -15.22 15.78 21.95 0.35 -14.87 16 18 O -0.51 -7.71 13.42 -51.44 -0.69 -8.40 16 19 C 0.05 1.13 6.00 44.99 0.27 1.40 16 20 C -0.16 -2.49 9.63 30.59 0.29 -2.20 16 21 C -0.18 -2.79 10.12 30.59 0.31 -2.48 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 26 H 0.13 5.12 7.22 -2.39 -0.02 5.10 16 27 H 0.16 1.84 6.56 -2.39 -0.02 1.82 16 28 H 0.14 2.81 6.81 -2.39 -0.02 2.79 16 29 H 0.43 3.42 9.10 -74.06 -0.67 2.75 16 30 H 0.13 3.10 7.97 -2.39 -0.02 3.08 16 31 H 0.10 1.36 6.15 -2.39 -0.01 1.35 16 32 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.50 8.06 -2.39 -0.02 1.48 16 Total: -1.00 -79.81 307.85 -0.30 -80.11 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.45 Total: 12.42 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.15 Total: -44.07 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -0.98 Total: -83.64 kcal Atomic # 8 Polarization: -104.25 SS G_CDS: -4.64 Total: -108.90 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 97.68 SS G_CDS: -0.31 Total: 97.37 kcal Total: -79.81 -0.30 -80.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309681277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.940 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds