Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03673 * 2 1 4 4 C 1.35319 * 107.74917 * 180.14984 * 3 2 1 5 5 C 1.50697 * 126.04461 * 179.87374 * 4 3 2 6 6 H 1.09007 * 109.46994 * 339.71493 * 5 4 3 7 7 N 1.46501 * 109.47200 * 219.71491 * 5 4 3 8 8 C 1.34772 * 119.99823 * 154.72145 * 7 5 4 9 9 O 1.21695 * 120.00176 * 0.27723 * 8 7 5 10 10 C 1.46375 * 120.00131 * 180.27515 * 8 7 5 11 11 H 1.08005 * 119.99733 * 353.94178 * 10 8 7 12 12 C 1.40042 * 120.00170 * 173.94085 * 10 8 7 13 13 N 1.30669 * 120.00455 * 6.15206 * 12 10 8 14 14 Si 1.86803 * 119.99867 * 186.14923 * 12 10 8 15 15 H 1.48498 * 109.47177 * 94.98772 * 14 12 10 16 16 H 1.48502 * 109.47127 * 214.98238 * 14 12 10 17 17 H 1.48493 * 109.47253 * 334.98410 * 14 12 10 18 18 C 1.52992 * 109.47119 * 99.71261 * 5 4 3 19 19 F 1.39899 * 109.47424 * 180.02562 * 18 5 4 20 20 F 1.39907 * 109.47301 * 300.00173 * 18 5 4 21 21 F 1.39902 * 109.47269 * 59.99974 * 18 5 4 22 22 C 1.39868 * 107.91339 * 359.61024 * 4 3 2 23 23 N 1.30837 * 108.20987 * 0.24134 * 22 4 3 24 24 H 1.09001 * 109.46887 * 270.30680 * 1 2 3 25 25 H 1.08997 * 109.47475 * 30.30602 * 1 2 3 26 26 H 1.08994 * 109.47047 * 150.31384 * 1 2 3 27 27 H 1.08005 * 126.12773 * 359.97438 * 3 2 1 28 28 H 0.96992 * 119.99679 * 334.99837 * 7 5 4 29 29 H 0.97000 * 120.00488 * 180.02562 * 13 12 10 30 30 H 1.08006 * 125.89606 * 180.22373 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5453 -0.0073 6 1 4.5001 2.5402 -0.3634 7 7 5.7818 0.9664 -0.8924 8 6 6.7125 1.7589 -1.4599 9 8 6.7139 2.9545 -1.2332 10 6 7.7218 1.1814 -2.3490 11 1 7.7823 0.1103 -2.4737 12 6 8.6089 2.0178 -3.0381 13 7 8.6165 3.3021 -2.7975 14 14 9.7814 1.2973 -4.3013 15 1 9.1811 1.4099 -5.6548 16 1 11.0657 2.0422 -4.2660 17 1 10.0297 -0.1326 -3.9872 18 6 5.3282 1.6458 1.4128 19 9 6.4644 2.4620 1.4094 20 9 4.3601 2.1986 2.2581 21 9 5.6720 0.3690 1.8700 22 6 3.5346 -0.7320 0.0036 23 7 2.2892 -1.1328 0.0056 24 1 -0.3633 0.0055 1.0277 25 1 -0.3634 0.8872 -0.5186 26 1 -0.3633 -0.8927 -0.5089 27 1 1.9281 2.1194 -0.0004 28 1 5.7807 0.0135 -1.0730 29 1 9.2306 3.8815 -3.2750 30 1 4.4054 -1.3709 0.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331350576.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = -110.335111 kcal Electronic energy + Delta-G solvation = -22035.170496 eV Core-core repulsion = 18031.537486 eV Total energy + Delta-G solvation = -4003.633009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.33047 -46.92051 -46.71456 -41.20961 -37.52021 -34.45761 -32.87860 -32.34429 -30.48455 -28.23683 -26.38621 -25.86419 -22.80859 -21.30152 -20.42885 -19.62452 -17.96078 -17.79093 -17.25258 -17.11808 -16.33315 -15.41953 -15.37331 -14.56539 -14.20941 -14.08312 -13.69430 -13.63616 -13.29238 -13.24916 -12.97012 -12.93527 -12.87715 -12.69155 -12.50966 -12.40715 -12.00790 -11.37132 -11.18344 -10.96770 -10.57955 -10.50998 -10.25447 -9.41983 -8.90244 -8.51345 -7.87750 -7.71164 -6.25254 -4.69755 1.84316 2.46369 2.69998 3.12939 3.20567 3.24081 3.53515 4.04425 4.31994 4.39364 4.53868 4.70345 4.76955 4.86131 4.97182 5.09265 5.19590 5.22796 5.43108 5.59230 5.80108 5.82536 6.16511 6.60405 6.92286 7.39516 7.62422 7.70795 7.87901 8.23926 8.97187 9.33649 10.49865 10.68325 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.005726 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.102522 B = 4888.666929 C = 5543.752640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.084 3.916 4 C -0.250 4.250 5 C 0.203 3.797 6 H 0.119 0.881 7 N -0.746 5.746 8 C 0.552 3.448 9 O -0.565 6.565 10 C -0.540 4.540 11 H 0.071 0.929 12 C 0.088 3.912 13 N -0.763 5.763 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.433 3.567 19 F -0.166 7.166 20 F -0.197 7.197 21 F -0.190 7.190 22 C 0.075 3.925 23 N -0.298 5.298 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.179 0.821 28 H 0.389 0.611 29 H 0.270 0.730 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 -5.245 4.724 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.064 4.064 4 C -0.262 4.262 5 C 0.091 3.909 6 H 0.137 0.863 7 N -0.401 5.401 8 C 0.357 3.643 9 O -0.447 6.447 10 C -0.576 4.576 11 H 0.089 0.911 12 C -0.132 4.132 13 N -0.392 5.392 14 Si 0.734 3.266 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.188 1.188 18 C 0.376 3.624 19 F -0.147 7.147 20 F -0.179 7.179 21 F -0.172 7.172 22 C -0.112 4.112 23 N -0.119 5.119 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.196 0.804 28 H 0.222 0.778 29 H 0.080 0.920 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.042 -5.170 4.858 15.733 hybrid contribution 1.168 -0.036 -0.374 1.227 sum -12.875 -5.207 4.483 14.594 Atomic orbital electron populations 1.21841 0.74160 1.04499 1.03293 1.48449 1.06633 1.03852 1.57031 1.22293 0.90399 0.93622 1.00051 1.19818 0.93537 0.94196 1.18620 1.19544 0.86340 0.99869 0.85131 0.86299 1.46314 1.31973 1.11450 1.50408 1.18383 0.80250 0.85843 0.79858 1.90637 1.74702 1.15237 1.64083 1.20813 1.15600 0.94096 1.27117 0.91121 1.25691 0.96614 0.94452 0.96452 1.70014 1.30910 1.04141 1.34092 0.86326 0.79585 0.79888 0.80802 1.19804 1.20421 1.18798 1.21712 0.76655 0.73381 0.90684 1.93268 1.51926 1.72723 1.96788 1.93090 1.64024 1.86036 1.74717 1.93095 1.92690 1.40518 1.90876 1.23745 0.95257 0.94218 0.97950 1.77365 1.01463 1.07988 1.25091 0.90800 0.89427 0.89312 0.80395 0.77776 0.91971 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.67 4.01 -68.16 -0.27 -4.95 16 3 C 0.08 1.08 11.40 -17.22 -0.20 0.89 16 4 C -0.25 -3.90 4.66 -105.05 -0.49 -4.38 16 5 C 0.20 3.82 2.49 -69.09 -0.17 3.64 16 6 H 0.12 2.37 7.57 -51.93 -0.39 1.97 16 7 N -0.75 -16.03 4.97 -56.35 -0.28 -16.31 16 8 C 0.55 15.02 7.28 -12.99 -0.09 14.93 16 9 O -0.57 -17.39 13.63 5.19 0.07 -17.32 16 10 C -0.54 -14.79 9.53 -35.63 -0.34 -15.13 16 11 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 12 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 13 N -0.76 -22.33 11.85 55.55 0.66 -21.67 16 14 Si 0.91 19.76 29.56 -169.99 -5.03 14.74 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 18 C 0.43 8.45 2.82 37.15 0.10 8.55 16 19 F -0.17 -3.88 15.69 2.25 0.04 -3.84 16 20 F -0.20 -3.50 17.02 2.25 0.04 -3.46 16 21 F -0.19 -3.58 16.61 2.25 0.04 -3.54 16 22 C 0.08 1.13 10.80 -17.37 -0.19 0.94 16 23 N -0.30 -4.43 12.58 30.63 0.39 -4.04 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.18 1.73 8.06 -52.48 -0.42 1.30 16 28 H 0.39 7.40 7.61 -40.82 -0.31 7.09 16 29 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 30 H 0.19 2.48 7.72 -52.48 -0.41 2.07 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -35.04 284.73 -3.19 -38.24 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.35 Total: 4.69 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.78 Total: 13.19 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.49 Total: -46.97 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.07 Total: -17.32 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 0.11 Total: -10.85 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.04 -3.19 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331350576.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.099 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds