Wall clock time and date at job start Mon Mar 30 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03673 * 2 1 4 4 C 1.35319 * 107.74917 * 180.14984 * 3 2 1 5 5 C 1.50697 * 126.04461 * 179.87374 * 4 3 2 6 6 H 1.09007 * 109.46994 * 339.71493 * 5 4 3 7 7 N 1.46501 * 109.47200 * 219.71491 * 5 4 3 8 8 C 1.34772 * 119.99823 * 154.72145 * 7 5 4 9 9 O 1.21695 * 120.00176 * 0.27723 * 8 7 5 10 10 C 1.46375 * 120.00131 * 180.27515 * 8 7 5 11 11 H 1.08005 * 119.99733 * 353.94178 * 10 8 7 12 12 C 1.40042 * 120.00170 * 173.94085 * 10 8 7 13 13 N 1.30669 * 120.00455 * 6.15206 * 12 10 8 14 14 Si 1.86803 * 119.99867 * 186.14923 * 12 10 8 15 15 H 1.48498 * 109.47177 * 94.98772 * 14 12 10 16 16 H 1.48502 * 109.47127 * 214.98238 * 14 12 10 17 17 H 1.48493 * 109.47253 * 334.98410 * 14 12 10 18 18 C 1.52992 * 109.47119 * 99.71261 * 5 4 3 19 19 F 1.39899 * 109.47424 * 180.02562 * 18 5 4 20 20 F 1.39907 * 109.47301 * 300.00173 * 18 5 4 21 21 F 1.39902 * 109.47269 * 59.99974 * 18 5 4 22 22 C 1.39868 * 107.91339 * 359.61024 * 4 3 2 23 23 N 1.30837 * 108.20987 * 0.24134 * 22 4 3 24 24 H 1.09001 * 109.46887 * 270.30680 * 1 2 3 25 25 H 1.08997 * 109.47475 * 30.30602 * 1 2 3 26 26 H 1.08994 * 109.47047 * 150.31384 * 1 2 3 27 27 H 1.08005 * 126.12773 * 359.97438 * 3 2 1 28 28 H 0.96992 * 119.99679 * 334.99837 * 7 5 4 29 29 H 0.97000 * 120.00488 * 180.02562 * 13 12 10 30 30 H 1.08006 * 125.89606 * 180.22373 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5453 -0.0073 6 1 4.5001 2.5402 -0.3634 7 7 5.7818 0.9664 -0.8924 8 6 6.7125 1.7589 -1.4599 9 8 6.7139 2.9545 -1.2332 10 6 7.7218 1.1814 -2.3490 11 1 7.7823 0.1103 -2.4737 12 6 8.6089 2.0178 -3.0381 13 7 8.6165 3.3021 -2.7975 14 14 9.7814 1.2973 -4.3013 15 1 9.1811 1.4099 -5.6548 16 1 11.0657 2.0422 -4.2660 17 1 10.0297 -0.1326 -3.9872 18 6 5.3282 1.6458 1.4128 19 9 6.4644 2.4620 1.4094 20 9 4.3601 2.1986 2.2581 21 9 5.6720 0.3690 1.8700 22 6 3.5346 -0.7320 0.0036 23 7 2.2892 -1.1328 0.0056 24 1 -0.3633 0.0055 1.0277 25 1 -0.3634 0.8872 -0.5186 26 1 -0.3633 -0.8927 -0.5089 27 1 1.9281 2.1194 -0.0004 28 1 5.7807 0.0135 -1.0730 29 1 9.2306 3.8815 -3.2750 30 1 4.4054 -1.3709 0.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331350576.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:51 Heat of formation + Delta-G solvation = -136.113074 kcal Electronic energy + Delta-G solvation = -22036.288312 eV Core-core repulsion = 18031.537486 eV Total energy + Delta-G solvation = -4004.750826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.92917 -48.45656 -48.40718 -42.28189 -39.45692 -36.08359 -34.56400 -33.81935 -31.92607 -29.61895 -27.93632 -27.26796 -24.32099 -22.54700 -21.75225 -21.23093 -19.57536 -19.37309 -19.04820 -18.56315 -17.67118 -17.37972 -16.31124 -15.98625 -15.91643 -15.30163 -15.26679 -15.24915 -14.87583 -14.65318 -14.59690 -14.51484 -14.42780 -14.17151 -13.63838 -13.54865 -13.26390 -13.01737 -12.98754 -12.68611 -12.57290 -11.98831 -11.70822 -10.90969 -10.43336 -9.94475 -9.74883 -9.55637 -8.28516 -6.83524 0.80878 1.42582 1.43899 1.48994 1.58993 1.60801 1.98937 2.26752 2.48497 2.74329 3.10455 3.13599 3.46843 3.70396 3.73193 3.90553 4.12160 4.26960 4.31952 4.48303 4.73105 4.75301 4.92605 5.35601 5.48165 5.85862 5.95213 6.03319 6.23651 6.59680 6.89231 7.42376 8.45776 8.66841 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.005726 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.102522 B = 4888.666929 C = 5543.752640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.371 5.371 3 C 0.099 3.901 4 C -0.279 4.279 5 C 0.213 3.787 6 H 0.106 0.894 7 N -0.736 5.736 8 C 0.541 3.459 9 O -0.609 6.609 10 C -0.569 4.569 11 H 0.088 0.912 12 C 0.033 3.967 13 N -0.816 5.816 14 Si 0.995 3.005 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.250 1.250 18 C 0.433 3.567 19 F -0.193 7.193 20 F -0.184 7.184 21 F -0.185 7.185 22 C 0.067 3.933 23 N -0.319 5.319 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.212 0.788 28 H 0.401 0.599 29 H 0.275 0.725 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 -6.444 4.125 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.151 5.151 3 C -0.050 4.050 4 C -0.291 4.291 5 C 0.102 3.898 6 H 0.123 0.877 7 N -0.390 5.390 8 C 0.346 3.654 9 O -0.495 6.495 10 C -0.605 4.605 11 H 0.106 0.894 12 C -0.183 4.183 13 N -0.445 5.445 14 Si 0.815 3.185 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.173 1.173 18 C 0.376 3.624 19 F -0.174 7.174 20 F -0.166 7.166 21 F -0.167 7.167 22 C -0.119 4.119 23 N -0.140 5.140 24 H 0.109 0.891 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.228 0.772 28 H 0.237 0.763 29 H 0.085 0.915 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.323 -6.436 4.284 17.163 hybrid contribution 1.373 0.327 -0.095 1.415 sum -13.950 -6.109 4.190 15.795 Atomic orbital electron populations 1.22305 0.71115 1.06348 1.05027 1.48868 1.08252 1.02946 1.55075 1.22748 0.89572 0.95146 0.97574 1.19600 0.93210 0.94097 1.22180 1.19450 0.86739 0.99839 0.83800 0.87667 1.45883 1.31544 1.11596 1.50004 1.18625 0.81141 0.85641 0.79979 1.90597 1.76088 1.17142 1.65638 1.21369 1.16258 0.95249 1.27654 0.89368 1.26879 0.98325 0.94610 0.98458 1.70165 1.32389 1.06131 1.35816 0.85038 0.76611 0.79429 0.77441 1.18776 1.19945 1.17303 1.21792 0.75999 0.73153 0.91436 1.93218 1.53612 1.73635 1.96957 1.93103 1.63266 1.85869 1.74337 1.93097 1.92669 1.40073 1.90865 1.23863 0.95817 0.94099 0.98108 1.77321 1.01540 1.09373 1.25757 0.89089 0.86470 0.88670 0.77158 0.76349 0.91492 0.79161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.47 127.77 1.47 2.47 16 2 N -0.37 -8.15 4.01 -369.57 -1.48 -9.63 16 3 C 0.10 2.32 11.40 83.54 0.95 3.27 16 4 C -0.28 -8.38 4.66 -20.14 -0.09 -8.47 16 5 C 0.21 8.02 2.49 44.24 0.11 8.13 16 6 H 0.11 4.27 7.57 -2.38 -0.02 4.25 16 7 N -0.74 -31.94 4.97 -450.40 -2.24 -34.18 16 8 C 0.54 30.14 7.28 86.36 0.63 30.77 16 9 O -0.61 -38.82 13.63 -4.33 -0.06 -38.88 16 10 C -0.57 -31.41 9.53 24.83 0.24 -31.17 16 11 H 0.09 4.38 7.85 -2.91 -0.02 4.35 16 12 C 0.03 1.81 5.49 85.30 0.47 2.27 16 13 N -0.82 -48.81 11.85 21.83 0.26 -48.55 16 14 Si 1.00 40.29 29.56 68.60 2.03 42.32 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 18 C 0.43 16.96 2.82 71.98 0.20 17.17 16 19 F -0.19 -9.26 15.69 44.97 0.71 -8.55 16 20 F -0.18 -6.42 17.02 44.97 0.77 -5.66 16 21 F -0.19 -6.94 16.61 44.97 0.75 -6.20 16 22 C 0.07 1.95 10.80 85.24 0.92 2.87 16 23 N -0.32 -8.90 12.58 -57.02 -0.72 -9.62 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.40 15.27 7.61 -92.71 -0.71 14.56 16 29 H 0.28 14.93 8.29 -92.71 -0.77 14.16 16 30 H 0.19 5.00 7.72 -2.91 -0.02 4.98 16 Total: -1.00 -77.39 284.73 5.40 -71.99 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.50 Total: 19.65 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 4.89 Total: 27.31 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -4.18 Total: -101.99 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.06 Total: -38.88 kcal Atomic # 9 Polarization: -22.62 SS G_CDS: 2.22 Total: -20.41 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -77.39 5.40 -71.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331350576.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.125 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds