Wall clock time and date at job start Mon Mar 30 2020 01:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99947 * 2 1 4 4 H 1.48495 * 109.46942 * 269.99490 * 3 2 1 5 5 H 1.48497 * 109.47057 * 29.99380 * 3 2 1 6 6 H 1.48504 * 109.46766 * 149.99587 * 3 2 1 7 7 C 1.37884 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99502 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46559 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46866 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54085 * 68.37566 * 11 10 9 13 13 O 1.42096 * 110.54134 * 291.62420 * 11 10 9 14 14 N 1.65605 * 104.44665 * 179.97438 * 11 10 9 15 15 C 1.46499 * 119.99754 * 65.00384 * 14 11 10 16 16 H 1.09002 * 109.47391 * 24.99564 * 15 14 11 17 17 C 1.50699 * 109.47060 * 264.99637 * 15 14 11 18 18 O 1.20827 * 120.00172 * 0.02562 * 17 15 14 19 19 O 1.34231 * 120.00242 * 180.02562 * 17 15 14 20 20 C 1.53000 * 109.46840 * 144.99895 * 15 14 11 21 21 C 1.53007 * 117.49549 * 248.74397 * 20 15 14 22 22 C 1.53001 * 117.49532 * 180.08701 * 20 15 14 23 23 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47363 * 60.00496 * 9 7 2 25 25 H 1.08995 * 109.47095 * 299.99765 * 9 7 2 26 26 H 1.09002 * 109.47279 * 60.00320 * 10 9 7 27 27 H 1.08999 * 109.47049 * 300.00148 * 10 9 7 28 28 H 0.97000 * 119.99610 * 244.99996 * 14 11 10 29 29 H 0.96696 * 117.00233 * 180.02562 * 19 17 15 30 30 H 1.08998 * 115.55045 * 34.41571 * 20 15 14 31 31 H 1.08997 * 117.49929 * 359.97438 * 21 20 15 32 32 H 1.08997 * 117.49703 * 145.02482 * 21 20 15 33 33 H 1.09002 * 117.49861 * 214.97615 * 22 20 15 34 34 H 1.09001 * 117.50171 * 359.97343 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0011 12 8 0.6657 -5.4199 -1.2367 13 8 0.6629 -5.4195 1.2373 14 7 2.5205 -6.3927 0.0018 15 6 3.4180 -6.5229 1.1524 16 1 2.9265 -6.1309 2.0428 17 6 4.6828 -5.7456 0.8934 18 8 4.8202 -5.1441 -0.1454 19 8 5.6567 -5.7214 1.8168 20 6 3.7611 -7.9984 1.3670 21 6 3.2009 -8.6794 2.6174 22 6 4.6922 -8.3451 2.5306 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8712 -3.6039 0.8923 27 1 2.8726 -3.6047 -0.8877 28 1 2.6187 -6.9857 -0.7595 29 1 6.4491 -5.2089 1.6058 30 1 3.8429 -8.5987 0.4609 31 1 2.5882 -8.0761 3.2873 32 1 2.9145 -9.7277 2.5340 33 1 5.3862 -9.1738 2.3901 34 1 5.0606 -7.5220 3.1429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381520894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:31 Heat of formation + Delta-G solvation = -144.510822 kcal Electronic energy + Delta-G solvation = -20143.612731 eV Core-core repulsion = 16783.505692 eV Total energy + Delta-G solvation = -3360.107039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57844 -37.82829 -36.64230 -36.34020 -35.52526 -34.22535 -33.86817 -31.14247 -27.90312 -25.58875 -23.02790 -22.46163 -21.62238 -20.89965 -19.14716 -18.26437 -17.58346 -17.05383 -16.62125 -16.37210 -15.73259 -15.35630 -15.10555 -14.58130 -14.42507 -14.11059 -13.39753 -13.24603 -12.51020 -12.23498 -11.79569 -11.78803 -11.68809 -11.67161 -11.59410 -11.44518 -11.20509 -11.06029 -10.92574 -10.72472 -10.51728 -10.36150 -10.32997 -9.88002 -9.57104 -9.08405 -8.48432 -6.10603 -4.15606 0.70265 2.03985 2.60569 3.02919 3.27699 3.33575 3.36602 3.67064 4.15416 4.23568 4.39367 4.52423 4.59856 4.70616 4.72995 4.94687 5.13209 5.24641 5.46715 5.53860 5.63326 5.65993 5.84418 5.89109 5.93740 6.35492 6.55026 6.87945 7.31688 7.37416 7.76230 7.83221 8.20130 8.87802 9.48868 11.00533 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.005324 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.723602 B = 5258.418513 C = 5975.677821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.580 4.580 11 S 2.587 3.413 12 O -0.959 6.959 13 O -0.963 6.963 14 N -1.100 6.100 15 C 0.194 3.806 16 H 0.132 0.868 17 C 0.457 3.543 18 O -0.493 6.493 19 O -0.511 6.511 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.164 4.164 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.419 0.581 29 H 0.410 0.590 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -16.698 4.968 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.714 4.714 11 S 2.685 3.315 12 O -0.949 6.949 13 O -0.953 6.953 14 N -0.855 5.855 15 C 0.083 3.917 16 H 0.149 0.851 17 C 0.296 3.704 18 O -0.379 6.379 19 O -0.323 6.323 20 C -0.184 4.184 21 C -0.204 4.204 22 C -0.202 4.202 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.253 0.747 29 H 0.269 0.731 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.481 -16.738 4.918 19.855 hybrid contribution 1.699 1.385 -0.635 2.283 sum 11.180 -15.353 4.282 19.469 Atomic orbital electron populations 1.69952 1.06096 1.27165 1.49724 1.25060 0.94964 0.99495 0.94928 0.86465 0.79682 0.82850 0.78257 1.20451 1.21006 1.19812 1.20998 0.93084 0.89700 1.51955 0.92066 1.18985 0.92635 0.90601 0.98870 1.30429 1.13313 1.17281 1.10410 1.05865 0.74612 0.76679 0.74356 1.93566 1.71356 1.85171 1.44829 1.93549 1.71079 1.85041 1.45657 1.55794 1.50226 1.52780 1.26709 1.19769 0.86214 0.94660 0.91022 0.85054 1.24211 0.85530 0.79188 0.81519 1.90775 1.79318 1.41187 1.26631 1.84519 1.29743 1.69804 1.48236 1.22267 1.07731 0.93118 0.95306 1.23163 0.96782 1.01698 0.98750 1.23128 0.93062 1.03838 1.00151 0.92551 0.94746 0.94852 0.87133 0.85233 0.74659 0.73114 0.86436 0.87767 0.88205 0.88397 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.58 -11.84 4.72 37.16 0.18 -11.66 16 11 S 2.59 47.25 5.44 -107.50 -0.58 46.67 16 12 O -0.96 -20.24 18.08 -57.54 -1.04 -21.28 16 13 O -0.96 -19.48 17.39 -57.54 -1.00 -20.48 16 14 N -1.10 -14.69 4.85 -5.88 -0.03 -14.72 16 15 C 0.19 2.25 2.96 -69.08 -0.20 2.04 16 16 H 0.13 1.49 7.24 -51.93 -0.38 1.12 16 17 C 0.46 5.49 7.08 36.01 0.25 5.74 16 18 O -0.49 -7.49 15.71 -18.75 -0.29 -7.79 16 19 O -0.51 -4.46 11.36 -39.26 -0.45 -4.90 16 20 C -0.16 -1.45 5.37 -90.62 -0.49 -1.93 16 21 C -0.17 -1.31 10.18 -26.69 -0.27 -1.58 16 22 C -0.16 -1.19 9.45 -26.69 -0.25 -1.44 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.11 2.06 7.71 -51.92 -0.40 1.66 16 27 H 0.13 2.58 7.80 -51.92 -0.41 2.17 16 28 H 0.42 4.69 8.78 -34.47 -0.30 4.38 16 29 H 0.41 2.12 9.10 45.56 0.41 2.53 16 30 H 0.12 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.10 0.86 8.05 -51.93 -0.42 0.45 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.82 6.85 -51.93 -0.36 0.47 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -36.56 308.54 -7.86 -44.42 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.50 Total: 4.59 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.33 Total: -21.65 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.71 Total: -40.74 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.78 Total: -54.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.58 Total: 46.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.56 -7.86 -44.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381520894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.089 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds