Wall clock time and date at job start Mon Mar 30 2020 01:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99947 * 2 1 4 4 H 1.48495 * 109.46942 * 269.99490 * 3 2 1 5 5 H 1.48497 * 109.47057 * 29.99380 * 3 2 1 6 6 H 1.48504 * 109.46766 * 149.99587 * 3 2 1 7 7 C 1.37884 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99502 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46559 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46866 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54085 * 68.37566 * 11 10 9 13 13 O 1.42096 * 110.54134 * 291.62420 * 11 10 9 14 14 N 1.65605 * 104.44665 * 179.97438 * 11 10 9 15 15 C 1.46499 * 119.99754 * 65.00384 * 14 11 10 16 16 H 1.09002 * 109.47391 * 24.99564 * 15 14 11 17 17 C 1.50699 * 109.47060 * 264.99637 * 15 14 11 18 18 O 1.20827 * 120.00172 * 0.02562 * 17 15 14 19 19 O 1.34231 * 120.00242 * 180.02562 * 17 15 14 20 20 C 1.53000 * 109.46840 * 144.99895 * 15 14 11 21 21 C 1.53007 * 117.49549 * 248.74397 * 20 15 14 22 22 C 1.53001 * 117.49532 * 180.08701 * 20 15 14 23 23 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47363 * 60.00496 * 9 7 2 25 25 H 1.08995 * 109.47095 * 299.99765 * 9 7 2 26 26 H 1.09002 * 109.47279 * 60.00320 * 10 9 7 27 27 H 1.08999 * 109.47049 * 300.00148 * 10 9 7 28 28 H 0.97000 * 119.99610 * 244.99996 * 14 11 10 29 29 H 0.96696 * 117.00233 * 180.02562 * 19 17 15 30 30 H 1.08998 * 115.55045 * 34.41571 * 20 15 14 31 31 H 1.08997 * 117.49929 * 359.97438 * 21 20 15 32 32 H 1.08997 * 117.49703 * 145.02482 * 21 20 15 33 33 H 1.09002 * 117.49861 * 214.97615 * 22 20 15 34 34 H 1.09001 * 117.50171 * 359.97343 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0011 12 8 0.6657 -5.4199 -1.2367 13 8 0.6629 -5.4195 1.2373 14 7 2.5205 -6.3927 0.0018 15 6 3.4180 -6.5229 1.1524 16 1 2.9265 -6.1309 2.0428 17 6 4.6828 -5.7456 0.8934 18 8 4.8202 -5.1441 -0.1454 19 8 5.6567 -5.7214 1.8168 20 6 3.7611 -7.9984 1.3670 21 6 3.2009 -8.6794 2.6174 22 6 4.6922 -8.3451 2.5306 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8712 -3.6039 0.8923 27 1 2.8726 -3.6047 -0.8877 28 1 2.6187 -6.9857 -0.7595 29 1 6.4491 -5.2089 1.6058 30 1 3.8429 -8.5987 0.4609 31 1 2.5882 -8.0761 3.2873 32 1 2.9145 -9.7277 2.5340 33 1 5.3862 -9.1738 2.3901 34 1 5.0606 -7.5220 3.1429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381520894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:31 Heat of formation + Delta-G solvation = -173.792357 kcal Electronic energy + Delta-G solvation = -20144.882473 eV Core-core repulsion = 16783.505692 eV Total energy + Delta-G solvation = -3361.376782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.49140 -38.61786 -38.20237 -37.21999 -37.13447 -35.93035 -35.22951 -33.16720 -28.88202 -27.63677 -23.94853 -23.47352 -23.03268 -21.74991 -20.52224 -19.36701 -18.98720 -18.45936 -18.00013 -17.47014 -16.99686 -16.70827 -16.55850 -16.41649 -15.37513 -15.15150 -14.88855 -14.51589 -14.12200 -13.75817 -13.44585 -13.31186 -13.22213 -12.96593 -12.86046 -12.63945 -12.45488 -12.34669 -12.26914 -12.17758 -12.07224 -11.81710 -11.47058 -11.26090 -11.00120 -10.66719 -10.59984 -8.28112 -6.42074 -0.81967 1.11373 1.38586 1.40755 1.48284 1.51923 2.04596 2.36229 2.68223 2.96369 3.04959 3.14418 3.44415 3.79812 3.84013 3.97753 3.99682 4.09640 4.23210 4.38762 4.68945 4.73016 4.94207 5.07513 5.22060 5.24934 5.25819 5.38979 5.60115 5.66070 5.88539 6.04706 6.70172 6.96841 7.27768 8.84178 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.005324 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.723602 B = 5258.418513 C = 5975.677821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.583 4.583 11 S 2.622 3.378 12 O -0.988 6.988 13 O -0.981 6.981 14 N -1.084 6.084 15 C 0.183 3.817 16 H 0.133 0.867 17 C 0.463 3.537 18 O -0.530 6.530 19 O -0.498 6.498 20 C -0.175 4.175 21 C -0.170 4.170 22 C -0.150 4.150 23 H 0.269 0.731 24 H 0.008 0.992 25 H 0.013 0.987 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.432 0.568 29 H 0.428 0.572 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.026 -17.542 5.690 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.715 4.715 11 S 2.718 3.282 12 O -0.979 6.979 13 O -0.971 6.971 14 N -0.843 5.843 15 C 0.073 3.927 16 H 0.151 0.849 17 C 0.303 3.697 18 O -0.419 6.419 19 O -0.311 6.311 20 C -0.195 4.195 21 C -0.207 4.207 22 C -0.187 4.187 23 H 0.077 0.923 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.269 0.731 29 H 0.290 0.710 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.607 -17.577 5.652 21.809 hybrid contribution 1.106 1.545 -0.793 2.059 sum 12.713 -16.032 4.860 21.030 Atomic orbital electron populations 1.70085 1.07938 1.28408 1.50663 1.26079 0.95882 1.03711 0.94232 0.85321 0.78615 0.77716 0.78649 1.19674 1.20370 1.18412 1.21448 0.93679 0.90960 1.51877 0.91368 1.18834 0.93403 0.92793 0.96641 1.30352 1.12463 1.17240 1.11431 1.04546 0.74455 0.76044 0.73171 1.93520 1.72691 1.85478 1.46167 1.93523 1.71957 1.85177 1.46460 1.55250 1.49970 1.51038 1.28070 1.20076 0.85808 0.96910 0.89908 0.84939 1.24187 0.85987 0.78319 0.81180 1.90774 1.80180 1.42811 1.28176 1.84472 1.29994 1.69718 1.46891 1.22287 1.09438 0.91190 0.96539 1.23265 0.97341 1.02303 0.97806 1.23214 0.92973 1.04131 0.98427 0.92254 0.97330 0.96877 0.85537 0.84836 0.73066 0.71017 0.85121 0.88512 0.86750 0.86559 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.02 1.20 4.98 29.85 0.15 1.35 16 10 C -0.58 -24.08 4.72 71.98 0.34 -23.74 16 11 S 2.62 96.05 5.44 -56.49 -0.31 95.74 16 12 O -0.99 -42.17 18.08 -127.65 -2.31 -44.48 16 13 O -0.98 -39.73 17.39 -127.65 -2.22 -41.95 16 14 N -1.08 -27.70 4.85 -172.52 -0.84 -28.54 16 15 C 0.18 3.92 2.96 44.25 0.13 4.05 16 16 H 0.13 2.83 7.24 -2.39 -0.02 2.81 16 17 C 0.46 10.27 7.08 71.24 0.50 10.77 16 18 O -0.53 -15.45 15.71 21.96 0.34 -15.10 16 19 O -0.50 -7.40 11.36 -51.42 -0.58 -7.98 16 20 C -0.17 -2.63 5.37 -10.79 -0.06 -2.69 16 21 C -0.17 -2.25 10.18 30.62 0.31 -1.94 16 22 C -0.15 -1.71 9.45 30.62 0.29 -1.42 16 23 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.13 4.71 7.71 -2.39 -0.02 4.69 16 27 H 0.13 5.37 7.80 -2.39 -0.02 5.35 16 28 H 0.43 9.02 8.78 -96.74 -0.85 8.17 16 29 H 0.43 3.27 9.10 -74.06 -0.67 2.60 16 30 H 0.13 1.63 8.12 -2.39 -0.02 1.61 16 31 H 0.10 1.44 8.05 -2.39 -0.02 1.42 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.30 6.85 -2.39 -0.02 1.29 16 Total: -1.00 -79.16 308.54 -1.62 -80.78 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.38 Total: 16.27 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 2.36 Total: -44.01 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -0.55 Total: -85.44 kcal Atomic # 8 Polarization: -104.75 SS G_CDS: -4.77 Total: -109.52 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 96.05 SS G_CDS: -0.31 Total: 95.74 kcal Total: -79.16 -1.62 -80.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381520894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.012 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds