Wall clock time and date at job start Mon Mar 30 2020 01:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30614 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46793 * 239.99864 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 120.00075 * 3 2 1 7 7 C 1.40133 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.46207 * 119.99817 * 359.97438 * 7 2 1 10 10 O 1.22133 * 119.99855 * 0.02562 * 9 7 2 11 11 N 1.34074 * 120.00027 * 180.27803 * 9 7 2 12 12 C 1.33003 * 120.00086 * 179.73205 * 11 9 7 13 13 C 1.41026 * 126.38489 * 0.02562 * 12 11 9 14 14 C 1.35423 * 108.18834 * 180.02562 * 13 12 11 15 15 N 1.36181 * 108.92728 * 359.97438 * 14 13 12 16 16 C 1.46498 * 125.83127 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46851 * 85.02451 * 16 15 14 18 18 C 1.53007 * 109.46861 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.46982 * 60.00321 * 18 17 16 20 20 F 1.39903 * 109.47011 * 180.02562 * 18 17 16 21 21 F 1.39896 * 109.46958 * 300.00095 * 18 17 16 22 22 N 1.37526 * 126.38446 * 179.71620 * 12 11 9 23 23 H 0.96998 * 126.34408 * 359.95846 * 22 12 11 24 24 H 0.96999 * 119.99897 * 0.02562 * 1 2 3 25 25 H 1.08001 * 125.90613 * 0.02562 * 13 12 11 26 26 H 1.07993 * 125.53715 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.47041 * 205.02273 * 16 15 14 28 28 H 1.08997 * 109.46949 * 325.02838 * 16 15 14 29 29 H 1.08998 * 109.47153 * 299.99753 * 17 16 15 30 30 H 1.09002 * 109.47452 * 60.00303 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0068 -1.2136 -0.0005 8 1 3.0868 -1.2135 -0.0001 9 6 1.2758 -2.4798 -0.0005 10 8 0.0544 -2.4797 -0.0005 11 7 1.9461 -3.6409 0.0046 12 6 1.2811 -4.7927 0.0100 13 6 -0.1204 -4.9495 0.0105 14 6 -0.3975 -6.2751 0.0173 15 7 0.7731 -6.9710 0.0206 16 6 0.9033 -8.4301 0.0286 17 6 0.8234 -8.9571 -1.4056 18 6 0.9587 -10.4811 -1.3972 19 9 -0.0763 -11.0370 -0.6378 20 9 0.8862 -10.9629 -2.7087 21 9 2.1906 -10.8368 -0.8377 22 7 1.8320 -6.0528 0.0101 23 1 2.7781 -6.2665 0.0057 24 1 -0.4850 0.8400 -0.0004 25 1 -0.8472 -4.1506 0.0062 26 1 -1.3861 -6.7097 0.0190 27 1 1.8633 -8.7068 0.4644 28 1 0.0971 -8.8636 0.6204 29 1 -0.1366 -8.6804 -1.8414 30 1 1.6296 -8.5236 -1.9975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425102674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:55 Heat of formation + Delta-G solvation = -109.236848 kcal Electronic energy + Delta-G solvation = -20650.281521 eV Core-core repulsion = 16646.696136 eV Total energy + Delta-G solvation = -4003.585385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.11618 -48.62498 -48.59004 -42.06782 -38.89253 -36.05929 -34.70582 -33.46194 -32.24211 -30.64444 -28.48612 -26.19665 -23.71259 -23.13465 -22.52167 -21.10579 -19.61420 -19.54656 -18.66194 -18.36198 -17.85006 -17.16397 -16.25292 -16.09116 -15.93102 -15.74373 -15.45894 -15.17120 -15.04124 -14.88587 -14.74152 -14.69768 -14.43166 -14.36500 -13.86532 -13.42744 -13.14105 -12.89862 -12.71412 -12.63537 -12.50245 -12.02043 -11.28205 -10.84610 -10.34110 -10.20785 -9.26377 -8.27329 -8.20590 -6.70487 0.44404 0.57465 1.38418 1.43876 1.55128 1.76582 1.90672 2.29902 2.66458 2.81678 2.91171 3.01069 3.05410 3.71429 3.72309 3.99208 4.10126 4.19956 4.34599 4.47534 4.69199 4.78503 4.97837 5.34726 5.44845 5.89850 6.16588 6.28346 6.62957 6.90837 7.11741 7.43489 8.60269 8.91408 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.053921 B = 0.003086 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.148914 B = 9072.117824 C = 9270.525100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.022 3.978 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.499 3.501 10 O -0.631 6.631 11 N -0.702 5.702 12 C 0.434 3.566 13 C -0.347 4.347 14 C 0.180 3.820 15 N -0.381 5.381 16 C 0.136 3.864 17 C -0.189 4.189 18 C 0.465 3.535 19 F -0.182 7.182 20 F -0.190 7.190 21 F -0.188 7.188 22 N -0.492 5.492 23 H 0.450 0.550 24 H 0.275 0.725 25 H 0.142 0.858 26 H 0.245 0.755 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -25.010 -1.666 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.304 3.696 10 O -0.521 6.521 11 N -0.458 5.458 12 C 0.175 3.825 13 C -0.380 4.380 14 C 0.044 3.956 15 N -0.173 5.173 16 C 0.016 3.984 17 C -0.229 4.229 18 C 0.411 3.589 19 F -0.163 7.163 20 F -0.171 7.171 21 F -0.169 7.169 22 N -0.224 5.224 23 H 0.300 0.700 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.261 0.739 27 H 0.136 0.864 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.232 -25.037 -1.653 25.093 hybrid contribution 0.202 0.585 -0.142 0.635 sum 0.434 -24.452 -1.795 24.522 Atomic orbital electron populations 1.70161 1.09343 1.28904 1.35967 1.27091 0.95747 1.04842 0.91594 0.85051 0.78302 0.74549 0.80145 1.18076 1.18855 1.18083 1.21272 0.94256 0.90470 1.51788 0.91238 1.19160 0.86058 0.87587 0.76770 1.90437 1.17509 1.89652 1.54469 1.69230 1.40475 0.96931 1.39214 1.19615 0.90450 0.85756 0.86643 1.22458 0.96085 0.97969 1.21462 1.23284 0.91031 0.90245 0.91059 1.46341 0.97646 1.01801 1.71462 1.22038 1.08717 0.71938 0.95712 1.23461 1.10070 0.87698 1.01631 1.20350 0.73444 0.91953 0.73184 1.93214 1.58962 1.87968 1.76174 1.93209 1.96031 1.90304 1.37590 1.93207 1.44579 1.93765 1.85395 1.44072 1.03338 0.98468 1.76496 0.70047 0.91495 0.84036 0.73904 0.86409 0.83494 0.84590 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -52.95 11.82 21.85 0.26 -52.69 16 2 C 0.02 1.34 5.50 85.33 0.47 1.81 16 3 Si 1.00 45.03 29.56 68.60 2.03 47.06 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.54 -36.03 9.63 24.80 0.24 -35.79 16 8 H 0.07 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.50 33.89 7.66 86.42 0.66 34.55 16 10 O -0.63 -44.98 11.95 -5.75 -0.07 -45.05 16 11 N -0.70 -40.75 10.53 -312.29 -3.29 -44.04 16 12 C 0.43 19.67 8.07 133.85 1.08 20.75 16 13 C -0.35 -14.34 9.54 22.30 0.21 -14.13 16 14 C 0.18 4.07 11.46 83.37 0.96 5.02 16 15 N -0.38 -7.08 3.64 -346.96 -1.26 -8.34 16 16 C 0.14 0.96 6.19 86.38 0.53 1.49 16 17 C -0.19 -1.21 5.58 30.60 0.17 -1.04 16 18 C 0.47 4.19 3.16 71.98 0.23 4.42 16 19 F -0.18 -1.73 16.80 44.97 0.76 -0.97 16 20 F -0.19 -2.46 17.32 44.97 0.78 -1.68 16 21 F -0.19 -2.10 16.80 44.97 0.76 -1.35 16 22 N -0.49 -14.22 7.38 -54.80 -0.40 -14.62 16 23 H 0.45 10.59 8.96 -213.29 -1.91 8.68 16 24 H 0.28 16.02 8.29 -92.71 -0.77 15.25 16 25 H 0.14 7.38 5.76 -2.91 -0.02 7.37 16 26 H 0.24 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.12 0.60 7.80 -2.39 -0.02 0.58 16 28 H 0.15 0.23 7.80 -2.39 -0.02 0.21 16 29 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -98.53 284.72 3.40 -95.12 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -0.70 Total: 9.47 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 4.55 Total: 17.08 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -4.70 Total: -119.69 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.07 Total: -45.05 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 2.29 Total: -4.00 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -98.53 3.40 -95.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425102674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.115 kcal (2) G-P(sol) polarization free energy of solvation -98.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds