Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00485 * 2 1 4 4 H 1.48503 * 109.46803 * 269.99706 * 3 2 1 5 5 H 1.48501 * 109.46725 * 29.99316 * 3 2 1 6 6 H 1.48497 * 109.47290 * 149.99309 * 3 2 1 7 7 C 1.37880 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00083 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99636 * 180.02562 * 7 2 1 10 10 O 1.42900 * 113.42043 * 313.20565 * 9 7 2 11 11 C 1.53501 * 114.20439 * 180.02562 * 9 7 2 12 12 N 1.47069 * 87.98817 * 220.34699 * 11 9 7 13 13 S 1.65593 * 136.06019 * 207.08400 * 12 11 9 14 14 O 1.42105 * 104.27730 * 333.93267 * 13 12 11 15 15 O 1.42102 * 104.27887 * 206.07636 * 13 12 11 16 16 C 1.81400 * 104.44820 * 90.00315 * 13 12 11 17 17 H 1.08998 * 110.91419 * 67.13180 * 16 13 12 18 18 C 1.55305 * 110.84891 * 190.71528 * 16 13 12 19 19 C 1.54947 * 100.94425 * 152.32114 * 18 16 13 20 20 O 1.43643 * 105.13652 * 323.55623 * 19 18 16 21 21 C 1.43236 * 109.97149 * 24.42759 * 20 19 18 22 22 C 1.47070 * 87.88152 * 27.34387 * 12 11 9 23 23 H 0.97002 * 119.99492 * 0.02562 * 1 2 3 24 24 H 0.96698 * 113.99359 * 46.79355 * 10 9 7 25 25 H 1.09007 * 113.46548 * 105.57086 * 11 9 7 26 26 H 1.09000 * 113.46815 * 335.13493 * 11 9 7 27 27 H 1.09002 * 111.12665 * 270.24566 * 18 16 13 28 28 H 1.09008 * 111.12319 * 34.40631 * 18 16 13 29 29 H 1.08997 * 110.31075 * 204.64270 * 19 18 16 30 30 H 1.08998 * 110.30702 * 82.47351 * 19 18 16 31 31 H 1.09001 * 109.83276 * 238.77606 * 21 20 19 32 32 H 1.09002 * 109.83501 * 117.80279 * 21 20 19 33 33 H 1.09005 * 113.46643 * 87.43571 * 22 12 11 34 34 H 1.09000 * 113.46881 * 217.87420 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0798 -0.2966 -0.9546 11 6 4.1408 -2.5942 0.0010 12 7 5.1410 -2.0881 0.9531 13 16 6.7051 -2.4601 1.3497 14 8 6.8375 -3.8320 1.0036 15 8 6.8372 -2.0283 2.6970 16 6 7.7094 -1.4260 0.2484 17 1 7.5952 -0.3704 0.4946 18 6 9.2030 -1.8479 0.3039 19 6 9.6813 -1.4231 -1.1074 20 8 8.5716 -1.6966 -1.9776 21 6 7.3498 -1.6874 -1.2301 22 6 4.1384 -1.1104 1.4026 23 1 -0.4849 0.8401 -0.0004 24 1 3.6811 0.5843 -0.9524 25 1 4.5639 -2.8798 -0.9621 26 1 3.4912 -3.3621 0.4210 27 1 9.7371 -1.3011 1.0809 28 1 9.3022 -2.9243 0.4448 29 1 10.5495 -2.0108 -1.4054 30 1 9.9202 -0.3598 -1.1216 31 1 6.8513 -2.6521 -1.3243 32 1 6.6974 -0.8953 -1.5975 33 1 3.4882 -1.4872 2.1922 34 1 4.5594 -0.1319 1.6337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527033858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -130.803291 kcal Electronic energy + Delta-G solvation = -20966.273121 eV Core-core repulsion = 17606.760485 eV Total energy + Delta-G solvation = -3359.512636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72120 -40.34372 -38.33711 -37.22635 -36.28519 -34.49230 -33.54162 -30.59119 -29.84398 -27.03373 -26.49895 -24.04010 -23.23798 -21.59907 -20.01667 -19.44786 -18.55750 -18.36772 -18.13307 -17.85034 -16.84117 -16.36376 -15.82233 -15.79803 -15.57529 -15.21172 -14.81949 -14.57917 -14.42603 -14.05567 -13.91738 -13.55031 -13.42992 -13.31895 -12.96523 -12.77126 -12.66381 -12.63835 -12.30582 -12.27419 -11.89447 -11.80973 -11.05757 -10.96434 -10.64813 -10.46992 -9.97208 -8.38684 -6.49157 -0.99725 1.25098 1.31220 1.41891 1.43495 2.20661 2.54187 2.69560 2.79535 2.88163 2.97452 3.26106 3.57750 3.76613 3.95821 3.98003 4.09086 4.18044 4.46584 4.50937 4.56040 4.66125 4.67498 4.73704 4.76468 4.85255 4.91303 5.01908 5.26909 5.66312 5.81664 6.07350 6.59209 6.74046 7.18023 8.76959 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.006670 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.585711 B = 4196.655623 C = 4636.029884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.024 3.976 3 Si 0.916 3.084 4 H -0.251 1.251 5 H -0.289 1.289 6 H -0.229 1.229 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.186 3.814 10 O -0.549 6.549 11 C 0.149 3.851 12 N -1.045 6.045 13 S 2.651 3.349 14 O -0.976 6.976 15 O -0.980 6.980 16 C -0.619 4.619 17 H 0.169 0.831 18 C -0.142 4.142 19 C 0.054 3.946 20 O -0.397 6.397 21 C 0.084 3.916 22 C 0.097 3.903 23 H 0.272 0.728 24 H 0.354 0.646 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.667 1.234 -0.131 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.177 4.177 3 Si 0.741 3.259 4 H -0.177 1.177 5 H -0.216 1.216 6 H -0.153 1.153 7 C -0.577 4.577 8 H 0.076 0.924 9 C 0.143 3.857 10 O -0.360 6.360 11 C 0.024 3.976 12 N -0.883 5.883 13 S 2.749 3.251 14 O -0.967 6.967 15 O -0.971 6.971 16 C -0.731 4.731 17 H 0.187 0.813 18 C -0.181 4.181 19 C -0.022 4.022 20 O -0.317 6.317 21 C 0.007 3.993 22 C -0.029 4.029 23 H 0.081 0.919 24 H 0.207 0.793 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.148 0.852 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.386 0.088 0.273 18.388 hybrid contribution -0.756 1.580 0.074 1.753 sum 17.631 1.669 0.347 17.713 Atomic orbital electron populations 1.70006 1.08078 1.28633 1.49744 1.25849 0.95606 1.02940 0.93263 0.86386 0.80077 0.79381 0.80102 1.17690 1.21577 1.15301 1.21394 0.89874 0.94504 1.51945 0.92424 1.20435 0.90287 0.89180 0.85824 1.86390 1.63774 1.25090 1.60783 1.22648 0.86968 0.96128 0.91874 1.59654 1.25136 1.49952 1.53559 1.03647 0.72515 0.74539 0.74402 1.93541 1.85779 1.31779 1.85569 1.93536 1.85841 1.84132 1.33598 1.32139 1.10998 1.18091 1.11841 0.81307 1.23371 0.89209 1.03725 1.01833 1.23619 0.89827 1.02298 0.86449 1.88366 1.15387 1.93191 1.34763 1.22765 0.88134 1.02715 0.85697 1.23771 0.87500 0.91420 1.00236 0.91908 0.79307 0.89605 0.88612 0.85156 0.89031 0.86825 0.89815 0.91317 0.88755 0.89162 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.38 13.96 21.45 0.30 -52.08 16 2 C 0.02 1.24 5.47 84.66 0.46 1.70 16 3 Si 0.92 36.87 24.42 68.60 1.68 38.55 16 4 H -0.25 -9.49 7.06 99.48 0.70 -8.79 16 5 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.23 -8.12 5.50 99.48 0.55 -7.57 16 7 C -0.54 -27.19 9.27 25.60 0.24 -26.95 16 8 H 0.06 3.22 8.06 -2.91 -0.02 3.19 16 9 C 0.19 7.68 1.10 -11.11 -0.01 7.67 16 10 O -0.55 -21.76 13.33 -148.98 -1.99 -23.75 16 11 C 0.15 5.45 8.10 83.18 0.67 6.13 16 12 N -1.04 -36.13 3.96 -549.83 -2.18 -38.31 16 13 S 2.65 82.38 5.35 -56.49 -0.30 82.08 16 14 O -0.98 -34.65 17.68 -127.65 -2.26 -36.90 16 15 O -0.98 -34.94 18.07 -127.65 -2.31 -37.25 16 16 C -0.62 -14.41 3.75 31.86 0.12 -14.29 16 17 H 0.17 3.26 8.14 -2.39 -0.02 3.24 16 18 C -0.14 -2.52 6.63 32.05 0.21 -2.30 16 19 C 0.05 0.94 7.78 72.65 0.56 1.50 16 20 O -0.40 -10.26 11.36 -148.98 -1.69 -11.96 16 21 C 0.08 2.23 7.29 72.45 0.53 2.76 16 22 C 0.10 3.62 7.56 83.27 0.63 4.25 16 23 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.35 13.60 3.16 -74.06 -0.23 13.36 16 25 H 0.09 2.85 7.87 -2.38 -0.02 2.83 16 26 H 0.10 3.45 8.10 -2.39 -0.02 3.44 16 27 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.63 7.93 -2.38 -0.02 1.61 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.92 7.26 -2.39 -0.02 1.90 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.09 3.41 8.10 -2.38 -0.02 3.40 16 34 H 0.08 2.62 7.15 -2.39 -0.02 2.60 16 Total: -1.00 -66.29 291.38 -4.61 -70.90 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.72 Total: 28.26 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.42 Total: -19.54 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.88 Total: -90.39 kcal Atomic # 8 Polarization: -101.61 SS G_CDS: -8.24 Total: -109.85 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.68 Total: 38.55 kcal Atomic # 16 Polarization: 82.38 SS G_CDS: -0.30 Total: 82.08 kcal Total: -66.29 -4.61 -70.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527033858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.907 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds