Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86998 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47176 * 124.99827 * 13 12 11 15 15 C 1.38264 * 119.99276 * 89.99942 * 14 13 12 16 16 C 1.38214 * 120.02723 * 180.02562 * 15 14 13 17 17 C 1.38236 * 120.01352 * 359.97438 * 16 15 14 18 18 C 1.38333 * 119.98583 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.01159 * 179.97438 * 18 17 16 20 20 C 1.38189 * 119.99327 * 269.73042 * 14 13 12 21 21 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 22 22 N 1.28637 * 110.17796 * 359.72483 * 21 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.08001 * 126.91742 * 0.02562 * 11 10 9 27 27 H 1.09001 * 109.47441 * 244.99784 * 13 12 11 28 28 H 1.09003 * 109.46882 * 4.99870 * 13 12 11 29 29 H 1.07999 * 119.98520 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.99337 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.00749 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.00855 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7542 -6.6851 1.1381 14 6 3.7686 -7.8115 0.1370 15 6 4.9115 -8.0690 -0.5973 16 6 4.9254 -9.1015 -1.5160 17 6 3.7966 -9.8777 -1.7009 18 6 2.6529 -9.6207 -0.9665 19 17 1.2347 -10.5947 -1.1987 20 6 2.6414 -8.5903 -0.0429 21 7 3.8403 -4.9294 -0.5715 22 7 3.2132 -3.8534 -0.8934 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 1.6340 -4.8278 1.7213 27 1 4.7573 -6.5438 1.5405 28 1 3.0682 -6.9289 1.9495 29 1 5.7935 -7.4625 -0.4535 30 1 5.8186 -9.3023 -2.0890 31 1 3.8075 -10.6843 -2.4191 32 1 1.7502 -8.3922 0.5341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594653964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = 109.740345 kcal Electronic energy + Delta-G solvation = -17807.484130 eV Core-core repulsion = 14795.960214 eV Total energy + Delta-G solvation = -3011.523916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53003 -39.67917 -36.80656 -34.93282 -33.27089 -31.48208 -31.04229 -30.99004 -27.62591 -26.81314 -23.46366 -22.98708 -22.46414 -21.11939 -20.05238 -17.46231 -16.82752 -16.31161 -16.03407 -15.81741 -15.26887 -14.51799 -14.15798 -14.14898 -13.71813 -13.53295 -13.11182 -12.55999 -12.11449 -11.92393 -11.79443 -11.72307 -11.61478 -11.17602 -10.97512 -10.73597 -10.63887 -10.10847 -9.69479 -9.45695 -9.34210 -9.27659 -9.01632 -8.42662 -8.12145 -5.98019 -3.98531 0.74587 0.89619 1.82424 2.22318 2.76515 3.37723 3.42025 3.43385 3.45664 3.53023 4.13298 4.36959 4.52233 4.61806 4.71349 4.85719 4.99034 5.12919 5.20872 5.34274 5.39019 5.49610 5.83220 5.84308 5.97652 6.06347 6.10104 6.32141 6.42369 7.12717 7.16594 7.53975 7.63533 7.99784 8.38366 9.04872 9.31181 9.64223 11.13127 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003432 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.272275 B = 8156.321136 C = 8629.926592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.092 3.908 10 C 0.036 3.964 11 C -0.083 4.083 12 N -0.304 5.304 13 C 0.164 3.836 14 C -0.097 4.097 15 C -0.077 4.077 16 C -0.109 4.109 17 C -0.101 4.101 18 C -0.039 4.039 19 Cl -0.070 7.070 20 C -0.088 4.088 21 N -0.103 5.103 22 N -0.261 5.261 23 H 0.261 0.739 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.182 0.818 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -22.679 2.536 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.101 4.101 11 C -0.231 4.231 12 N -0.100 5.100 13 C 0.042 3.958 14 C -0.099 4.099 15 C -0.096 4.096 16 C -0.128 4.128 17 C -0.120 4.120 18 C -0.065 4.065 19 Cl -0.041 7.041 20 C -0.108 4.108 21 N -0.082 5.082 22 N -0.128 5.128 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.199 0.801 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.627 -22.780 1.473 24.068 hybrid contribution -0.561 0.789 0.883 1.310 sum 7.066 -21.992 2.356 23.219 Atomic orbital electron populations 1.69949 1.05971 1.26747 1.51132 1.24975 0.94875 0.99223 0.95350 0.86509 0.79718 0.83098 0.78203 1.20562 1.21301 1.19939 1.21047 0.93240 0.89770 1.50128 0.92296 1.17731 0.90890 0.87581 0.98499 1.23019 0.97828 0.97638 0.91629 1.23376 0.97549 0.96088 1.06101 1.47163 1.22867 1.18867 1.21065 1.20719 1.03308 0.78790 0.92958 1.19692 0.94218 0.96529 0.99435 1.21213 0.98034 0.96152 0.94175 1.21137 0.98188 0.95210 0.98233 1.21139 0.91640 1.00295 0.98919 1.20855 0.89292 0.96157 1.00212 1.98380 1.39391 1.69960 1.96348 1.20962 0.98438 0.93858 0.97518 1.78179 1.21605 1.06929 1.01494 1.75084 1.07011 1.07262 1.23456 0.92926 0.94546 0.94323 0.80121 0.87764 0.87065 0.84761 0.84652 0.84802 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -14.57 9.09 -34.44 -0.31 -14.89 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 9 C 0.09 2.41 5.55 -29.03 -0.16 2.25 16 10 C 0.04 0.82 6.44 -82.78 -0.53 0.29 16 11 C -0.08 -1.48 11.49 -17.05 -0.20 -1.68 16 12 N -0.30 -4.90 3.43 -62.44 -0.21 -5.11 16 13 C 0.16 1.68 6.58 -5.19 -0.03 1.64 16 14 C -0.10 -1.02 5.25 -104.63 -0.55 -1.57 16 15 C -0.08 -0.75 9.70 -39.58 -0.38 -1.14 16 16 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 17 C -0.10 -0.92 9.83 -39.55 -0.39 -1.31 16 18 C -0.04 -0.40 6.32 -39.50 -0.25 -0.65 16 19 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.20 16 20 C -0.09 -0.93 9.49 -39.55 -0.38 -1.30 16 21 N -0.10 -2.07 12.92 60.35 0.78 -1.29 16 22 N -0.26 -6.22 12.40 33.29 0.41 -5.81 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 25 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 27 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.11 0.80 8.01 -51.93 -0.42 0.38 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -33.90 305.80 -7.21 -41.12 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.34 Total: -4.30 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.68 Total: -18.17 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.71 Total: -38.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.90 -7.21 -41.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.858 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds