Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86998 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47176 * 124.99827 * 13 12 11 15 15 C 1.38264 * 119.99276 * 89.99942 * 14 13 12 16 16 C 1.38214 * 120.02723 * 180.02562 * 15 14 13 17 17 C 1.38236 * 120.01352 * 359.97438 * 16 15 14 18 18 C 1.38333 * 119.98583 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.01159 * 179.97438 * 18 17 16 20 20 C 1.38189 * 119.99327 * 269.73042 * 14 13 12 21 21 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 22 22 N 1.28637 * 110.17796 * 359.72483 * 21 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.08001 * 126.91742 * 0.02562 * 11 10 9 27 27 H 1.09001 * 109.47441 * 244.99784 * 13 12 11 28 28 H 1.09003 * 109.46882 * 4.99870 * 13 12 11 29 29 H 1.07999 * 119.98520 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.99337 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.00749 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.00855 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7542 -6.6851 1.1381 14 6 3.7686 -7.8115 0.1370 15 6 4.9115 -8.0690 -0.5973 16 6 4.9254 -9.1015 -1.5160 17 6 3.7966 -9.8777 -1.7009 18 6 2.6529 -9.6207 -0.9665 19 17 1.2347 -10.5947 -1.1987 20 6 2.6414 -8.5903 -0.0429 21 7 3.8403 -4.9294 -0.5715 22 7 3.2132 -3.8534 -0.8934 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 1.6340 -4.8278 1.7213 27 1 4.7573 -6.5438 1.5405 28 1 3.0682 -6.9289 1.9495 29 1 5.7935 -7.4625 -0.4535 30 1 5.8186 -9.3023 -2.0890 31 1 3.8075 -10.6843 -2.4191 32 1 1.7502 -8.3922 0.5341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594653964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = 89.165394 kcal Electronic energy + Delta-G solvation = -17808.376327 eV Core-core repulsion = 14795.960214 eV Total energy + Delta-G solvation = -3012.416113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.01250 -40.42183 -37.57662 -36.21423 -35.19078 -32.93088 -32.40198 -31.77266 -29.39788 -27.91922 -25.44537 -23.77138 -23.48608 -22.47568 -21.46968 -18.58111 -18.32740 -17.80113 -17.18761 -16.62433 -16.47362 -16.31221 -15.59015 -14.90010 -14.66013 -14.45621 -14.40213 -14.23027 -13.70170 -13.56770 -12.89205 -12.68690 -12.59623 -12.51231 -12.46161 -12.40376 -11.92319 -11.86380 -11.65004 -11.34457 -10.83920 -10.57247 -10.07875 -9.82824 -9.75127 -8.17635 -6.26252 -0.01955 0.16745 0.80495 1.08339 1.41151 1.43393 1.53761 1.68587 1.80788 2.45552 2.64799 3.15239 3.32891 3.63135 3.78032 3.92644 4.04960 4.15942 4.28258 4.34594 4.43975 4.51531 4.62009 4.78004 4.85808 5.13175 5.27136 5.30316 5.39031 5.47565 5.56422 5.72790 5.78139 5.85951 6.24021 6.82272 7.40407 7.75731 8.93329 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003432 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.272275 B = 8156.321136 C = 8629.926592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.523 4.523 8 H 0.045 0.955 9 C 0.102 3.898 10 C -0.010 4.010 11 C -0.052 4.052 12 N -0.283 5.283 13 C 0.152 3.848 14 C -0.110 4.110 15 C -0.087 4.087 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.054 4.054 19 Cl -0.072 7.072 20 C -0.098 4.098 21 N -0.110 5.110 22 N -0.311 5.311 23 H 0.266 0.734 24 H 0.034 0.966 25 H 0.005 0.995 26 H 0.225 0.775 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -23.735 3.664 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.063 0.937 9 C 0.063 3.937 10 C -0.148 4.148 11 C -0.202 4.202 12 N -0.078 5.078 13 C 0.033 3.967 14 C -0.111 4.111 15 C -0.105 4.105 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.081 4.081 19 Cl -0.044 7.044 20 C -0.118 4.118 21 N -0.089 5.089 22 N -0.178 5.178 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.023 0.977 26 H 0.241 0.759 27 H 0.147 0.853 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.768 -23.874 2.601 25.566 hybrid contribution -0.876 0.934 0.546 1.392 sum 7.893 -22.940 3.147 24.463 Atomic orbital electron populations 1.70045 1.07293 1.27882 1.51569 1.25801 0.95785 1.02702 0.94755 0.85492 0.78603 0.78872 0.78324 1.20260 1.19935 1.19448 1.21292 0.92801 0.91537 1.50499 0.93663 1.17377 0.91150 0.88495 0.96668 1.22635 0.98751 0.99033 0.94337 1.23764 0.97132 0.93987 1.05277 1.47595 1.21226 1.19495 1.19505 1.21353 1.05769 0.76155 0.93385 1.19734 0.94519 0.96789 1.00056 1.21476 0.98278 0.96545 0.94233 1.21459 0.98942 0.94534 0.97929 1.21432 0.91340 1.00652 0.98797 1.21049 0.89693 0.96520 1.00812 1.98377 1.39605 1.70007 1.96375 1.21131 0.98816 0.94037 0.97780 1.78037 1.21629 1.06246 1.02971 1.74989 1.08258 1.09329 1.25240 0.92526 0.94772 0.97708 0.75859 0.85269 0.83271 0.83949 0.82233 0.83116 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.52 -31.03 9.09 25.60 0.23 -30.80 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.10 5.53 5.55 29.10 0.16 5.69 16 10 C -0.01 -0.45 6.44 41.59 0.27 -0.18 16 11 C -0.05 -1.75 11.49 83.49 0.96 -0.79 16 12 N -0.28 -8.45 3.43 -351.46 -1.21 -9.66 16 13 C 0.15 2.58 6.58 85.63 0.56 3.14 16 14 C -0.11 -2.02 5.25 -19.87 -0.10 -2.13 16 15 C -0.09 -1.50 9.70 22.27 0.22 -1.29 16 16 C -0.11 -1.67 10.05 22.26 0.22 -1.45 16 17 C -0.10 -1.68 9.83 22.29 0.22 -1.47 16 18 C -0.05 -1.03 6.32 22.32 0.14 -0.89 16 19 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 20 C -0.10 -1.87 9.49 22.29 0.21 -1.65 16 21 N -0.11 -4.32 12.92 37.02 0.48 -3.84 16 22 N -0.31 -15.09 12.40 -48.60 -0.60 -15.69 16 23 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 24 H 0.03 1.81 8.12 -2.38 -0.02 1.79 16 25 H 0.00 0.28 8.14 -2.39 -0.02 0.27 16 26 H 0.22 5.38 8.06 -2.91 -0.02 5.35 16 27 H 0.13 1.64 8.09 -2.39 -0.02 1.62 16 28 H 0.15 1.44 8.01 -2.39 -0.02 1.42 16 29 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -75.53 305.80 5.59 -69.94 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 1.13 Total: -0.50 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 3.55 Total: -30.90 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.05 Total: -84.84 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -75.53 5.59 -69.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.104 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds