Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46915 * 2 1 4 4 C 1.50697 * 109.47315 * 120.00327 * 2 1 3 5 5 O 1.21305 * 120.00005 * 119.99748 * 4 2 1 6 6 N 1.34779 * 119.99968 * 300.00036 * 4 2 1 7 7 C 1.40586 * 120.00116 * 180.02562 * 6 4 2 8 8 C 1.40657 * 126.08252 * 359.97039 * 7 6 4 9 9 N 1.30913 * 108.38554 * 179.77427 * 8 7 6 10 10 N 1.40060 * 108.40658 * 0.38728 * 9 8 7 11 11 C 1.37327 * 126.06997 * 179.87349 * 10 9 8 12 12 H 1.07998 * 120.00582 * 185.44908 * 11 10 9 13 13 C 1.38989 * 119.99638 * 5.17669 * 11 10 9 14 14 N 1.31295 * 120.00227 * 354.31128 * 13 11 10 15 15 Si 1.86794 * 119.99993 * 174.31104 * 13 11 10 16 16 H 1.48498 * 109.47527 * 94.97968 * 15 13 11 17 17 H 1.48507 * 109.47412 * 214.98035 * 15 13 11 18 18 H 1.48504 * 109.47189 * 334.98217 * 15 13 11 19 19 C 1.35681 * 126.08287 * 179.97438 * 7 6 4 20 20 C 1.53007 * 109.46589 * 240.00106 * 2 1 3 21 21 F 1.39900 * 109.47230 * 299.99844 * 20 2 1 22 22 F 1.39903 * 109.46897 * 60.00104 * 20 2 1 23 23 F 1.39901 * 109.46642 * 179.97438 * 20 2 1 24 24 H 1.09000 * 109.47185 * 299.99865 * 1 2 3 25 25 H 1.08997 * 109.47762 * 59.99834 * 1 2 3 26 26 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99650 * 359.97438 * 6 4 2 28 28 H 1.07991 * 125.80439 * 0.02562 * 8 7 6 29 29 H 0.96997 * 120.00133 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.24575 * 0.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6967 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1759 -0.9125 3.6024 8 6 2.9879 -2.0608 3.6224 9 7 3.2205 -2.3803 4.8705 10 7 2.5618 -1.4580 5.6933 11 6 2.5612 -1.4557 7.0665 12 1 1.9473 -0.7490 7.6052 13 6 3.3463 -2.3667 7.7633 14 7 4.0014 -3.3008 7.1135 15 14 3.4697 -2.2620 9.6242 16 1 2.4802 -3.1833 10.2385 17 1 4.8381 -2.6487 10.0522 18 1 3.1887 -0.8709 10.0615 19 6 1.9258 -0.5579 4.8880 20 6 2.0399 -0.7213 -1.2494 21 9 1.5735 -2.0403 -1.2493 22 9 1.5735 -0.0617 -2.3916 23 9 3.4389 -0.7208 -1.2497 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.1494 0.5388 2.5435 28 1 3.3598 -2.5868 2.7557 29 1 4.5496 -3.9363 7.5997 30 1 1.3312 0.2824 5.2144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742600566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = -132.281010 kcal Electronic energy + Delta-G solvation = -21453.800567 eV Core-core repulsion = 17449.215912 eV Total energy + Delta-G solvation = -4004.584655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.08848 -48.58580 -48.54572 -41.77323 -40.41531 -36.00887 -35.35563 -34.60105 -32.21231 -29.62846 -27.38254 -26.91597 -24.66798 -22.87962 -21.85097 -21.19510 -19.82878 -19.44239 -19.16992 -18.60110 -17.57178 -17.34988 -16.74687 -16.42337 -15.76906 -15.50443 -15.44066 -15.11342 -14.97966 -14.89941 -14.77380 -14.71568 -14.65385 -14.06444 -13.50566 -13.43552 -13.28332 -12.96782 -12.89994 -12.80165 -12.36770 -12.07265 -11.87413 -11.03230 -10.86491 -10.75850 -10.10407 -8.55509 -8.47024 -6.24434 1.16444 1.40596 1.45349 1.55139 1.59720 1.85003 2.01380 2.20234 2.48157 2.67816 2.84658 3.04848 3.09355 3.24423 3.76932 3.85850 4.04860 4.44458 4.59242 4.69055 4.73231 5.01097 5.05807 5.15386 5.29308 5.40946 5.96187 6.29565 6.62397 6.73613 7.27345 7.47113 7.67980 8.52658 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.052014 B = 0.003801 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.187483 B = 7364.086721 C = 7666.113746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 H 0.179 0.821 4 C 0.501 3.499 5 O -0.566 6.566 6 N -0.601 5.601 7 C -0.047 4.047 8 C -0.058 4.058 9 N -0.314 5.314 10 N -0.168 5.168 11 C -0.355 4.355 12 H 0.143 0.857 13 C -0.006 4.006 14 N -0.826 5.826 15 Si 1.018 2.982 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.242 1.242 19 C -0.074 4.074 20 C 0.467 3.533 21 F -0.188 7.188 22 F -0.172 7.172 23 F -0.190 7.190 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.425 0.575 28 H 0.164 0.836 29 H 0.276 0.724 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 11.877 -10.458 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 H 0.196 0.804 4 C 0.287 3.713 5 O -0.445 6.445 6 N -0.246 5.246 7 C -0.153 4.153 8 C -0.234 4.234 9 N -0.146 5.146 10 N 0.063 4.937 11 C -0.486 4.486 12 H 0.161 0.839 13 C -0.217 4.217 14 N -0.454 5.454 15 Si 0.837 3.163 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.165 1.165 19 C -0.224 4.224 20 C 0.412 3.588 21 F -0.169 7.169 22 F -0.154 7.154 23 F -0.171 7.171 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.263 0.737 28 H 0.181 0.819 29 H 0.086 0.914 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.780 10.174 -9.766 16.106 hybrid contribution -0.054 0.228 -0.218 0.320 sum -7.834 10.403 -9.984 16.409 Atomic orbital electron populations 1.21964 0.86893 1.04571 1.07145 1.22623 1.02931 1.03480 0.87338 0.80412 1.20413 0.81070 0.84914 0.84893 1.90710 1.39332 1.27924 1.86510 1.42150 1.50387 1.30029 1.02026 1.17274 1.11174 1.00583 0.86297 1.24150 1.04134 0.99476 0.95614 1.78167 1.21555 1.14957 0.99887 1.44858 1.27937 1.15133 1.05776 1.20646 1.29549 1.21403 0.76970 0.83937 1.26880 0.94211 0.93698 1.06951 1.70405 1.23261 1.12720 1.38993 0.84592 0.78067 0.80363 0.73267 1.19012 1.20397 1.16468 1.22037 1.09880 1.01669 0.88813 1.20142 0.75306 0.77610 0.85723 1.93179 1.88345 1.38631 1.96785 1.93187 1.88331 1.80445 1.53399 1.93191 1.30772 1.96385 1.96791 0.87207 0.87497 0.92197 0.73665 0.81880 0.91449 0.79005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.85 71.98 0.64 -1.25 16 2 C -0.14 -2.73 2.71 -11.54 -0.03 -2.76 16 3 H 0.18 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.50 15.72 6.89 87.66 0.60 16.32 16 5 O -0.57 -24.19 11.99 -3.11 -0.04 -24.22 16 6 N -0.60 -18.27 5.36 -303.92 -1.63 -19.89 16 7 C -0.05 -2.06 6.90 37.73 0.26 -1.80 16 8 C -0.06 -3.15 10.85 85.42 0.93 -2.23 16 9 N -0.31 -18.86 10.42 -56.46 -0.59 -19.45 16 10 N -0.17 -9.16 3.74 -190.01 -0.71 -9.87 16 11 C -0.35 -18.43 10.24 84.01 0.86 -17.57 16 12 H 0.14 6.33 7.84 -2.91 -0.02 6.31 16 13 C -0.01 -0.30 5.50 84.95 0.47 0.17 16 14 N -0.83 -47.69 11.83 21.66 0.26 -47.44 16 15 Si 1.02 38.07 29.55 68.60 2.03 40.10 16 16 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 17 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 19 C -0.07 -3.23 11.49 83.37 0.96 -2.27 16 20 C 0.47 11.64 2.42 71.98 0.17 11.82 16 21 F -0.19 -5.72 15.88 44.97 0.71 -5.00 16 22 F -0.17 -3.51 16.80 44.97 0.76 -2.75 16 23 F -0.19 -5.79 16.40 44.97 0.74 -5.05 16 24 H 0.11 0.87 7.56 -2.39 -0.02 0.85 16 25 H 0.11 0.86 7.80 -2.39 -0.02 0.84 16 26 H 0.06 1.01 7.80 -2.38 -0.02 0.99 16 27 H 0.42 8.24 8.24 -92.70 -0.76 7.47 16 28 H 0.16 9.04 5.92 -2.91 -0.02 9.03 16 29 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.19 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -78.28 278.81 6.83 -71.45 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.45 Total: 21.70 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.86 Total: 0.43 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -2.67 Total: -96.64 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 2.21 Total: -12.81 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -78.28 6.83 -71.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742600566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.831 kcal (2) G-P(sol) polarization free energy of solvation -78.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds