Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99943 * 2 1 4 4 H 1.48502 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47195 * 300.00487 * 3 2 1 6 6 H 1.48503 * 109.46948 * 60.00600 * 3 2 1 7 7 C 1.37873 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00232 * 66.04815 * 10 9 7 12 12 C 1.53001 * 109.46795 * 199.57129 * 11 10 9 13 13 C 1.52996 * 117.49971 * 244.82315 * 12 11 10 14 14 C 1.52993 * 60.00225 * 252.51506 * 13 12 11 15 15 C 1.46905 * 110.99733 * 190.00187 * 10 9 7 16 16 C 1.53006 * 109.47234 * 75.65768 * 15 10 9 17 17 H 1.09000 * 115.54851 * 329.43919 * 16 15 10 18 18 C 1.52996 * 117.50141 * 183.76502 * 16 15 10 19 19 C 1.52996 * 60.00178 * 252.48833 * 18 16 15 20 20 Cl 1.80294 * 117.49766 * 252.51128 * 19 18 16 21 21 Cl 1.80297 * 117.49979 * 107.48752 * 19 18 16 22 22 H 0.97003 * 120.00014 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46760 * 60.00478 * 9 7 2 24 24 H 1.09002 * 109.47028 * 300.00803 * 9 7 2 25 25 H 1.08996 * 109.47056 * 319.57060 * 11 10 9 26 26 H 1.08999 * 109.47020 * 79.57106 * 11 10 9 27 27 H 1.09002 * 115.55226 * 30.53685 * 12 11 10 28 28 H 1.09006 * 117.50113 * 0.02562 * 13 12 11 29 29 H 1.09004 * 117.50027 * 145.02010 * 13 12 11 30 30 H 1.08998 * 117.49959 * 252.50762 * 14 13 12 31 31 H 1.09007 * 117.49829 * 107.49316 * 14 13 12 32 32 H 1.08995 * 109.47097 * 315.66096 * 15 10 9 33 33 H 1.08996 * 109.47080 * 195.65302 * 15 10 9 34 34 H 1.09008 * 117.49355 * 359.97438 * 18 16 15 35 35 H 1.08995 * 117.49937 * 144.97185 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9710 -3.6540 1.2527 12 6 4.2466 -4.4733 1.0464 13 6 4.3848 -5.7764 1.8362 14 6 5.2286 -4.5582 2.2166 15 6 1.5212 -4.8935 -0.2387 16 6 1.1554 -5.0078 -1.7200 17 1 0.9498 -4.0653 -2.2275 18 6 0.3533 -6.2352 -2.1570 19 6 1.8318 -6.1144 -2.5318 20 17 2.2274 -5.7596 -4.2547 21 17 2.9993 -7.1842 -1.6698 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 3.2351 -2.6387 1.5484 26 1 2.3660 -4.1142 2.0339 27 1 4.6642 -4.4477 0.0399 28 1 3.5667 -6.0503 2.5024 29 1 4.8931 -6.6086 1.3491 30 1 6.2921 -4.5889 1.9800 31 1 4.9658 -4.0305 3.1335 32 1 0.6141 -4.9376 0.3639 33 1 2.1811 -5.7160 0.0370 34 1 0.0866 -6.9615 -1.3892 35 1 -0.3804 -6.1001 -2.9516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749117084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = 37.584552 kcal Electronic energy + Delta-G solvation = -17588.311439 eV Core-core repulsion = 14674.766106 eV Total energy + Delta-G solvation = -2913.545333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.48800 -37.30589 -35.85893 -35.71260 -34.63071 -32.41458 -27.71934 -27.26054 -24.03125 -22.19763 -22.11366 -21.46134 -20.04750 -19.60789 -16.82251 -16.04043 -15.46197 -15.11256 -14.75178 -14.13188 -13.67082 -13.50998 -13.11214 -12.68575 -12.53288 -11.94258 -11.73765 -11.67320 -11.58722 -11.24733 -11.01984 -10.98660 -10.91216 -10.75587 -10.57091 -10.43486 -10.22861 -10.03254 -9.63642 -9.56401 -9.43396 -9.13696 -8.45465 -7.29618 -6.04873 -4.05606 1.33713 2.37430 3.30264 3.38253 3.41153 3.43606 4.15718 4.33897 4.36895 4.47313 4.92846 5.18571 5.29536 5.31717 5.32332 5.48209 5.58416 5.71884 5.79993 5.85675 5.91756 6.03649 6.15981 6.32384 6.36271 6.40132 6.54168 6.83897 7.23387 7.31235 7.79759 8.05745 8.17614 8.51532 9.03061 9.59030 11.05914 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.006277 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.307192 B = 4459.905933 C = 5665.994947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.191 3.809 10 N -0.530 5.530 11 C 0.093 3.907 12 C -0.129 4.129 13 C -0.189 4.189 14 C -0.185 4.185 15 C 0.072 3.928 16 C -0.089 4.089 17 H 0.137 0.863 18 C -0.151 4.151 19 C 0.006 3.994 20 Cl -0.105 7.105 21 Cl -0.099 7.099 22 H 0.260 0.740 23 H 0.032 0.968 24 H -0.009 1.009 25 H 0.092 0.908 26 H 0.021 0.979 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -13.753 -1.495 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.066 3.934 10 N -0.253 5.253 11 C -0.035 4.035 12 C -0.148 4.148 13 C -0.226 4.226 14 C -0.222 4.222 15 C -0.057 4.057 16 C -0.109 4.109 17 H 0.155 0.845 18 C -0.189 4.189 19 C -0.045 4.045 20 Cl -0.078 7.078 21 Cl -0.072 7.072 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.008 0.992 25 H 0.110 0.890 26 H 0.039 0.961 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.606 -13.601 -1.949 14.206 hybrid contribution -0.037 0.684 0.450 0.819 sum 3.569 -12.917 -1.500 13.485 Atomic orbital electron populations 1.69963 1.06034 1.26651 1.51164 1.24972 0.94828 0.99270 0.95455 0.86486 0.80206 0.83548 0.77480 1.19598 1.21049 1.21169 1.21210 0.93635 0.89844 1.49780 0.91656 1.19794 0.90090 0.87416 0.96090 1.61942 1.27602 1.02096 1.33703 1.21556 0.91466 1.00291 0.90149 1.22435 0.98080 0.97793 0.96469 1.22971 1.02989 0.92142 1.04530 1.22891 0.96906 1.02256 1.00171 1.21808 0.97828 0.95104 0.90946 1.23371 0.95875 0.94177 0.97439 0.84546 1.24018 0.89997 1.01298 1.03616 1.26880 0.91306 1.02538 0.83784 1.98732 1.95142 1.94840 1.19087 1.98712 1.63885 1.67715 1.76856 0.93012 0.95002 0.99165 0.88981 0.96109 0.87307 0.89524 0.89735 0.89373 0.89144 0.94273 0.89932 0.86663 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -13.69 8.24 -34.44 -0.28 -13.97 16 8 H 0.07 1.77 7.31 -52.49 -0.38 1.39 16 9 C 0.19 4.69 4.53 -4.97 -0.02 4.67 16 10 N -0.53 -10.68 4.36 -236.07 -1.03 -11.71 16 11 C 0.09 1.74 5.07 -3.83 -0.02 1.72 16 12 C -0.13 -2.05 5.17 -90.62 -0.47 -2.51 16 13 C -0.19 -2.54 10.02 -26.74 -0.27 -2.80 16 14 C -0.18 -2.51 10.25 -26.73 -0.27 -2.79 16 15 C 0.07 1.20 5.00 -3.82 -0.02 1.18 16 16 C -0.09 -1.37 5.51 -90.62 -0.50 -1.87 16 17 H 0.14 2.40 7.05 -51.93 -0.37 2.03 16 18 C -0.15 -1.79 9.93 -26.73 -0.27 -2.05 16 19 C 0.01 0.09 3.62 -26.73 -0.10 -0.01 16 20 Cl -0.10 -1.48 29.29 -51.86 -1.52 -3.00 16 21 Cl -0.10 -1.33 27.27 -51.86 -1.41 -2.74 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.03 0.83 6.79 -51.93 -0.35 0.47 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.09 1.92 6.58 -51.93 -0.34 1.58 16 26 H 0.02 0.38 7.74 -51.93 -0.40 -0.03 16 27 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 28 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.66 8.00 -51.93 -0.42 0.25 16 33 H 0.08 1.28 5.09 -51.93 -0.26 1.01 16 34 H 0.12 1.19 8.14 -51.92 -0.42 0.76 16 35 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -27.84 319.73 -10.78 -38.62 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.04 Total: -0.05 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.31 Total: -16.99 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.29 Total: -36.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -2.93 Total: -5.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.84 -10.78 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.203 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds