Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99943 * 2 1 4 4 H 1.48502 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47195 * 300.00487 * 3 2 1 6 6 H 1.48503 * 109.46948 * 60.00600 * 3 2 1 7 7 C 1.37873 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00232 * 66.04815 * 10 9 7 12 12 C 1.53001 * 109.46795 * 199.57129 * 11 10 9 13 13 C 1.52996 * 117.49971 * 244.82315 * 12 11 10 14 14 C 1.52993 * 60.00225 * 252.51506 * 13 12 11 15 15 C 1.46905 * 110.99733 * 190.00187 * 10 9 7 16 16 C 1.53006 * 109.47234 * 75.65768 * 15 10 9 17 17 H 1.09000 * 115.54851 * 329.43919 * 16 15 10 18 18 C 1.52996 * 117.50141 * 183.76502 * 16 15 10 19 19 C 1.52996 * 60.00178 * 252.48833 * 18 16 15 20 20 Cl 1.80294 * 117.49766 * 252.51128 * 19 18 16 21 21 Cl 1.80297 * 117.49979 * 107.48752 * 19 18 16 22 22 H 0.97003 * 120.00014 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46760 * 60.00478 * 9 7 2 24 24 H 1.09002 * 109.47028 * 300.00803 * 9 7 2 25 25 H 1.08996 * 109.47056 * 319.57060 * 11 10 9 26 26 H 1.08999 * 109.47020 * 79.57106 * 11 10 9 27 27 H 1.09002 * 115.55226 * 30.53685 * 12 11 10 28 28 H 1.09006 * 117.50113 * 0.02562 * 13 12 11 29 29 H 1.09004 * 117.50027 * 145.02010 * 13 12 11 30 30 H 1.08998 * 117.49959 * 252.50762 * 14 13 12 31 31 H 1.09007 * 117.49829 * 107.49316 * 14 13 12 32 32 H 1.08995 * 109.47097 * 315.66096 * 15 10 9 33 33 H 1.08996 * 109.47080 * 195.65302 * 15 10 9 34 34 H 1.09008 * 117.49355 * 359.97438 * 18 16 15 35 35 H 1.08995 * 117.49937 * 144.97185 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9710 -3.6540 1.2527 12 6 4.2466 -4.4733 1.0464 13 6 4.3848 -5.7764 1.8362 14 6 5.2286 -4.5582 2.2166 15 6 1.5212 -4.8935 -0.2387 16 6 1.1554 -5.0078 -1.7200 17 1 0.9498 -4.0653 -2.2275 18 6 0.3533 -6.2352 -2.1570 19 6 1.8318 -6.1144 -2.5318 20 17 2.2274 -5.7596 -4.2547 21 17 2.9993 -7.1842 -1.6698 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 3.2351 -2.6387 1.5484 26 1 2.3660 -4.1142 2.0339 27 1 4.6642 -4.4477 0.0399 28 1 3.5667 -6.0503 2.5024 29 1 4.8931 -6.6086 1.3491 30 1 6.2921 -4.5889 1.9800 31 1 4.9658 -4.0305 3.1335 32 1 0.6141 -4.9376 0.3639 33 1 2.1811 -5.7160 0.0370 34 1 0.0866 -6.9615 -1.3892 35 1 -0.3804 -6.1001 -2.9516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749117084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = 23.403612 kcal Electronic energy + Delta-G solvation = -17588.926370 eV Core-core repulsion = 14674.766106 eV Total energy + Delta-G solvation = -2914.160264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80703 -38.50964 -37.01026 -36.93624 -36.00177 -34.42942 -29.57083 -28.71192 -25.81563 -23.32022 -23.20895 -22.99516 -21.33936 -21.03591 -18.64429 -17.49092 -16.91190 -16.61255 -16.15699 -15.67177 -15.17015 -14.84521 -14.50101 -14.21296 -13.60542 -13.58433 -13.52342 -13.10576 -12.83501 -12.74122 -12.57134 -12.31336 -12.23502 -12.14086 -12.06768 -11.92912 -11.61157 -11.33235 -11.21343 -11.00985 -10.77762 -10.57286 -10.54265 -8.96936 -8.18038 -6.25949 0.23715 1.26894 1.40440 1.42260 1.54809 2.30176 2.42049 2.95906 3.11308 3.15675 3.26422 3.65071 4.01521 4.13000 4.17018 4.24833 4.36949 4.49428 4.62168 4.65982 4.71164 4.81775 4.89615 4.96491 5.07198 5.13162 5.26394 5.31785 5.35274 5.48077 5.69559 6.10805 6.39939 6.68701 6.90922 7.43294 8.92828 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.006277 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.307192 B = 4459.905933 C = 5665.994947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.209 3.791 10 N -0.536 5.536 11 C 0.098 3.902 12 C -0.148 4.148 13 C -0.169 4.169 14 C -0.174 4.174 15 C 0.077 3.923 16 C -0.115 4.115 17 H 0.109 0.891 18 C -0.119 4.119 19 C 0.005 3.995 20 Cl -0.109 7.109 21 Cl -0.093 7.093 22 H 0.263 0.737 23 H 0.013 0.987 24 H -0.038 1.038 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -15.044 -1.304 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.083 3.917 10 N -0.259 5.259 11 C -0.030 4.030 12 C -0.167 4.167 13 C -0.206 4.206 14 C -0.212 4.212 15 C -0.051 4.051 16 C -0.135 4.135 17 H 0.127 0.873 18 C -0.157 4.157 19 C -0.047 4.047 20 Cl -0.083 7.083 21 Cl -0.066 7.066 22 H 0.072 0.928 23 H 0.031 0.969 24 H -0.021 1.021 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.532 -14.912 -1.757 15.684 hybrid contribution -0.308 1.037 0.402 1.154 sum 4.224 -13.876 -1.355 14.568 Atomic orbital electron populations 1.70073 1.07469 1.27618 1.52103 1.25791 0.95651 1.02752 0.95082 0.85465 0.79059 0.79273 0.77640 1.19013 1.20596 1.20476 1.21490 0.93516 0.91218 1.49409 0.92230 1.19403 0.90028 0.88593 0.93670 1.61889 1.26831 1.02555 1.34660 1.21472 0.92704 0.99301 0.89536 1.22146 0.97584 1.00064 0.96873 1.23018 1.02851 0.91577 1.03161 1.22997 0.97394 1.01907 0.98853 1.21823 0.97665 0.93561 0.92069 1.23137 0.99348 0.94543 0.96454 0.87327 1.24187 0.88987 0.98685 1.03871 1.26913 0.92683 1.01771 0.83290 1.98732 1.95247 1.94954 1.19319 1.98711 1.63928 1.67221 1.76721 0.92814 0.96942 1.02084 0.92000 0.95792 0.88595 0.88872 0.88271 0.87765 0.88850 0.94609 0.88310 0.84340 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.52 -28.88 8.24 25.60 0.21 -28.67 16 8 H 0.06 3.32 7.31 -2.91 -0.02 3.30 16 9 C 0.21 10.73 4.53 85.56 0.39 11.12 16 10 N -0.54 -22.19 4.36 -900.79 -3.93 -26.11 16 11 C 0.10 3.70 5.07 86.30 0.44 4.14 16 12 C -0.15 -4.56 5.17 -10.79 -0.06 -4.61 16 13 C -0.17 -4.10 10.02 30.59 0.31 -3.79 16 14 C -0.17 -4.37 10.25 30.59 0.31 -4.05 16 15 C 0.08 2.57 5.00 86.30 0.43 3.00 16 16 C -0.12 -3.51 5.51 -10.79 -0.06 -3.57 16 17 H 0.11 3.96 7.05 -2.39 -0.02 3.95 16 18 C -0.12 -2.58 9.93 30.59 0.30 -2.28 16 19 C 0.00 0.12 3.62 30.59 0.11 0.23 16 20 Cl -0.11 -2.99 29.29 -2.72 -0.08 -3.07 16 21 Cl -0.09 -2.32 27.27 -2.72 -0.07 -2.39 16 22 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.01 0.68 6.79 -2.39 -0.02 0.67 16 24 H -0.04 -2.16 8.12 -2.39 -0.02 -2.18 16 25 H 0.06 2.68 6.58 -2.39 -0.02 2.66 16 26 H 0.02 0.87 7.74 -2.39 -0.02 0.85 16 27 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.09 2.17 8.04 -2.38 -0.02 2.15 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 33 H 0.10 2.94 5.09 -2.39 -0.01 2.92 16 34 H 0.14 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -60.83 319.73 2.16 -58.67 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.08 Total: 9.22 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 2.85 Total: -27.72 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.64 Total: -80.97 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -0.15 Total: -5.46 kcal Total: -60.83 2.16 -58.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.073 kcal (2) G-P(sol) polarization free energy of solvation -60.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds