Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00037 * 3 2 1 5 5 H 1.48506 * 109.47303 * 29.99827 * 3 2 1 6 6 H 1.48498 * 109.47366 * 150.00047 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99493 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47433 * 175.62226 * 9 7 2 11 11 C 1.46898 * 111.00160 * 199.52877 * 10 9 7 12 12 C 1.53002 * 109.47504 * 71.81745 * 11 10 9 13 13 C 1.52994 * 117.49793 * 244.03426 * 12 11 10 14 14 C 1.53000 * 117.49898 * 175.37221 * 12 11 10 15 15 C 1.46903 * 110.99834 * 75.57104 * 10 9 7 16 16 C 1.53002 * 109.46838 * 190.00520 * 15 10 9 17 17 H 1.09000 * 115.54894 * 330.57791 * 16 15 10 18 18 C 1.52993 * 117.51860 * 116.28557 * 16 15 10 19 19 C 1.52996 * 60.00228 * 107.47757 * 18 16 15 20 20 Cl 1.80299 * 117.49924 * 252.51212 * 19 18 16 21 21 Cl 1.80299 * 117.50077 * 107.48724 * 19 18 16 22 22 H 0.97000 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47003 * 55.62220 * 9 7 2 24 24 H 1.08997 * 109.47757 * 295.62828 * 9 7 2 25 25 H 1.09004 * 109.46739 * 191.82215 * 11 10 9 26 26 H 1.09006 * 109.46889 * 311.81518 * 11 10 9 27 27 H 1.08998 * 115.54569 * 29.70052 * 12 11 10 28 28 H 1.09003 * 117.50219 * 359.97438 * 13 12 11 29 29 H 1.09004 * 117.49719 * 145.02185 * 13 12 11 30 30 H 1.08993 * 117.49586 * 214.97973 * 14 12 11 31 31 H 1.09001 * 117.50025 * 359.97438 * 14 12 11 32 32 H 1.08991 * 109.46855 * 70.00211 * 15 10 9 33 33 H 1.08995 * 109.46848 * 309.99966 * 15 10 9 34 34 H 1.09008 * 117.49932 * 214.96763 * 18 16 15 35 35 H 1.09000 * 117.49995 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2021 -3.6138 -0.1036 11 6 1.5311 -4.8365 -0.5646 12 6 1.1689 -4.6928 -2.0442 13 6 -0.3163 -4.6952 -2.4115 14 6 0.5565 -5.9083 -2.7430 15 6 2.8906 -3.8408 1.1740 16 6 4.0393 -4.8297 0.9655 17 1 3.8949 -5.5562 0.1659 18 6 5.4618 -4.3230 1.2112 19 6 4.8111 -5.2874 2.2048 20 17 4.2978 -4.6194 3.7989 21 17 5.4121 -6.9871 2.2306 22 1 -0.4850 0.8400 -0.0004 23 1 0.5665 -2.5242 -0.8462 24 1 0.6848 -2.5910 0.9285 25 1 2.1988 -5.6883 -0.4350 26 1 0.6234 -4.9945 0.0179 27 1 1.8313 -4.0560 -2.6305 28 1 -1.0355 -4.7997 -1.5991 29 1 -0.6310 -4.0603 -3.2398 30 1 0.8156 -6.0710 -3.7891 31 1 0.4119 -6.8106 -2.1487 32 1 2.1864 -4.2493 1.8986 33 1 3.2875 -2.8961 1.5456 34 1 6.2534 -4.7160 0.5731 35 1 5.5797 -3.2846 1.5210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749117085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = 37.841877 kcal Electronic energy + Delta-G solvation = -17419.906958 eV Core-core repulsion = 14506.372784 eV Total energy + Delta-G solvation = -2913.534174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.55470 -37.34484 -35.97987 -35.75322 -34.58994 -32.43338 -27.74506 -27.27020 -24.15993 -22.24658 -21.99245 -21.26518 -20.44670 -19.47303 -16.63433 -16.26135 -15.63360 -14.95842 -14.53652 -14.27985 -13.93769 -13.34590 -13.10422 -12.75390 -12.40623 -12.18034 -11.96402 -11.53364 -11.37185 -11.23203 -11.17983 -11.02717 -10.85198 -10.82614 -10.65893 -10.60280 -10.14470 -9.95814 -9.85841 -9.60452 -9.37290 -9.17972 -8.41646 -7.33590 -6.02129 -4.03236 1.22309 2.27069 3.31498 3.32516 3.38058 3.40798 4.14305 4.26035 4.42886 4.51052 4.86095 5.16873 5.28697 5.32611 5.33451 5.46862 5.59188 5.67297 5.87300 5.89609 5.96568 6.00294 6.12548 6.25561 6.30784 6.46209 6.52720 6.77329 7.23061 7.33151 7.79774 8.09129 8.15756 8.51167 9.03789 9.60675 11.08378 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006267 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.363123 B = 4466.823003 C = 6140.598902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.529 5.529 11 C 0.081 3.919 12 C -0.128 4.128 13 C -0.178 4.178 14 C -0.190 4.190 15 C 0.089 3.911 16 C -0.098 4.098 17 H 0.129 0.871 18 C -0.135 4.135 19 C -0.006 4.006 20 Cl -0.096 7.096 21 Cl -0.111 7.111 22 H 0.261 0.739 23 H 0.042 0.958 24 H -0.012 1.012 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -12.036 1.134 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.254 5.254 11 C -0.047 4.047 12 C -0.147 4.147 13 C -0.215 4.215 14 C -0.228 4.228 15 C -0.040 4.040 16 C -0.118 4.118 17 H 0.146 0.854 18 C -0.173 4.173 19 C -0.058 4.058 20 Cl -0.069 7.069 21 Cl -0.084 7.084 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.509 -11.854 0.934 14.063 hybrid contribution -0.223 0.590 0.764 0.991 sum 7.286 -11.264 1.698 13.522 Atomic orbital electron populations 1.69955 1.06014 1.26692 1.51110 1.24965 0.94820 0.99182 0.95562 0.86552 0.79742 0.83339 0.78085 1.20690 1.21402 1.19885 1.21144 0.93450 0.89899 1.49805 0.91968 1.19776 0.90087 0.86983 0.96282 1.62095 1.31761 1.04918 1.26599 1.21665 0.96633 0.93485 0.92910 1.22235 0.95885 0.99982 0.96575 1.22974 0.94394 1.00720 1.03414 1.22950 1.06179 0.92857 1.00784 1.21646 0.93017 0.97458 0.91829 1.23464 0.94362 1.00476 0.93459 0.85371 1.24020 0.97308 0.99102 0.96871 1.27033 1.09569 0.84488 0.84676 1.98745 1.91477 1.84793 1.31871 1.98725 1.88943 1.22403 1.98341 0.92982 0.93989 0.99400 0.91866 0.95603 0.86994 0.89229 0.89141 0.89351 0.89494 0.94616 0.88885 0.86614 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.50 -13.61 8.60 -34.44 -0.30 -13.90 16 8 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 9 C 0.19 4.79 4.59 -4.98 -0.02 4.77 16 10 N -0.53 -10.53 4.38 -236.07 -1.03 -11.57 16 11 C 0.08 1.39 5.09 -3.82 -0.02 1.37 16 12 C -0.13 -2.10 4.97 -90.62 -0.45 -2.55 16 13 C -0.18 -2.78 9.98 -26.69 -0.27 -3.04 16 14 C -0.19 -2.54 10.26 -26.69 -0.27 -2.81 16 15 C 0.09 1.57 4.15 -3.82 -0.02 1.55 16 16 C -0.10 -1.37 5.43 -90.62 -0.49 -1.86 16 17 H 0.13 1.71 6.40 -51.93 -0.33 1.38 16 18 C -0.14 -1.65 9.86 -26.74 -0.26 -1.92 16 19 C -0.01 -0.08 3.62 -26.73 -0.10 -0.17 16 20 Cl -0.10 -1.35 28.23 -51.86 -1.46 -2.81 16 21 Cl -0.11 -1.35 29.29 -51.86 -1.52 -2.87 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.04 1.12 6.95 -51.93 -0.36 0.76 16 24 H -0.01 -0.32 8.00 -51.93 -0.42 -0.73 16 25 H 0.06 0.94 6.02 -51.93 -0.31 0.63 16 26 H 0.03 0.46 7.79 -51.93 -0.40 0.06 16 27 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 28 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.09 1.81 7.05 -51.93 -0.37 1.44 16 34 H 0.12 1.19 8.14 -51.92 -0.42 0.76 16 35 H 0.12 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -27.90 321.00 -10.85 -38.75 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.09 Total: -0.03 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.29 Total: -17.12 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.30 Total: -36.99 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -2.98 Total: -5.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.90 -10.85 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.588 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds