Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00037 * 3 2 1 5 5 H 1.48506 * 109.47303 * 29.99827 * 3 2 1 6 6 H 1.48498 * 109.47366 * 150.00047 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99493 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47433 * 175.62226 * 9 7 2 11 11 C 1.46898 * 111.00160 * 199.52877 * 10 9 7 12 12 C 1.53002 * 109.47504 * 71.81745 * 11 10 9 13 13 C 1.52994 * 117.49793 * 244.03426 * 12 11 10 14 14 C 1.53000 * 117.49898 * 175.37221 * 12 11 10 15 15 C 1.46903 * 110.99834 * 75.57104 * 10 9 7 16 16 C 1.53002 * 109.46838 * 190.00520 * 15 10 9 17 17 H 1.09000 * 115.54894 * 330.57791 * 16 15 10 18 18 C 1.52993 * 117.51860 * 116.28557 * 16 15 10 19 19 C 1.52996 * 60.00228 * 107.47757 * 18 16 15 20 20 Cl 1.80299 * 117.49924 * 252.51212 * 19 18 16 21 21 Cl 1.80299 * 117.50077 * 107.48724 * 19 18 16 22 22 H 0.97000 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47003 * 55.62220 * 9 7 2 24 24 H 1.08997 * 109.47757 * 295.62828 * 9 7 2 25 25 H 1.09004 * 109.46739 * 191.82215 * 11 10 9 26 26 H 1.09006 * 109.46889 * 311.81518 * 11 10 9 27 27 H 1.08998 * 115.54569 * 29.70052 * 12 11 10 28 28 H 1.09003 * 117.50219 * 359.97438 * 13 12 11 29 29 H 1.09004 * 117.49719 * 145.02185 * 13 12 11 30 30 H 1.08993 * 117.49586 * 214.97973 * 14 12 11 31 31 H 1.09001 * 117.50025 * 359.97438 * 14 12 11 32 32 H 1.08991 * 109.46855 * 70.00211 * 15 10 9 33 33 H 1.08995 * 109.46848 * 309.99966 * 15 10 9 34 34 H 1.09008 * 117.49932 * 214.96763 * 18 16 15 35 35 H 1.09000 * 117.49995 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2021 -3.6138 -0.1036 11 6 1.5311 -4.8365 -0.5646 12 6 1.1689 -4.6928 -2.0442 13 6 -0.3163 -4.6952 -2.4115 14 6 0.5565 -5.9083 -2.7430 15 6 2.8906 -3.8408 1.1740 16 6 4.0393 -4.8297 0.9655 17 1 3.8949 -5.5562 0.1659 18 6 5.4618 -4.3230 1.2112 19 6 4.8111 -5.2874 2.2048 20 17 4.2978 -4.6194 3.7989 21 17 5.4121 -6.9871 2.2306 22 1 -0.4850 0.8400 -0.0004 23 1 0.5665 -2.5242 -0.8462 24 1 0.6848 -2.5910 0.9285 25 1 2.1988 -5.6883 -0.4350 26 1 0.6234 -4.9945 0.0179 27 1 1.8313 -4.0560 -2.6305 28 1 -1.0355 -4.7997 -1.5991 29 1 -0.6310 -4.0603 -3.2398 30 1 0.8156 -6.0710 -3.7891 31 1 0.4119 -6.8106 -2.1487 32 1 2.1864 -4.2493 1.8986 33 1 3.2875 -2.8961 1.5456 34 1 6.2534 -4.7160 0.5731 35 1 5.5797 -3.2846 1.5210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749117085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = 23.582173 kcal Electronic energy + Delta-G solvation = -17420.525305 eV Core-core repulsion = 14506.372784 eV Total energy + Delta-G solvation = -2914.152521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85934 -38.54849 -37.05396 -36.96007 -35.96348 -34.44464 -29.66128 -28.63839 -25.93561 -23.37762 -23.14222 -22.88824 -21.67889 -20.87030 -18.51381 -17.61508 -17.05627 -16.41869 -16.13252 -15.65914 -15.38407 -14.81186 -14.38101 -14.24389 -13.81908 -13.69084 -13.25760 -13.15464 -12.78260 -12.66133 -12.48144 -12.41465 -12.32089 -12.21623 -12.14141 -11.90081 -11.79650 -11.37778 -11.22838 -11.04246 -10.70226 -10.63842 -10.52096 -9.02039 -8.14940 -6.23804 0.17717 1.21499 1.43311 1.43854 1.54434 2.23656 2.43297 2.92779 3.08988 3.18647 3.41203 3.50796 3.92973 4.07785 4.09277 4.27948 4.29584 4.58623 4.60741 4.69754 4.71158 4.81188 4.82355 4.87235 5.07217 5.11128 5.24562 5.29776 5.35226 5.46617 5.71629 6.12404 6.38623 6.64401 6.91706 7.45151 8.95535 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006267 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.363123 B = 4466.823003 C = 6140.598902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.531 5.531 11 C 0.084 3.916 12 C -0.150 4.150 13 C -0.197 4.197 14 C -0.150 4.150 15 C 0.095 3.905 16 C -0.105 4.105 17 H 0.141 0.859 18 C -0.121 4.121 19 C -0.002 4.002 20 Cl -0.109 7.109 21 Cl -0.097 7.097 22 H 0.262 0.738 23 H 0.018 0.982 24 H -0.046 1.046 25 H 0.092 0.908 26 H 0.014 0.986 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -13.131 0.501 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.255 5.255 11 C -0.043 4.043 12 C -0.169 4.169 13 C -0.234 4.234 14 C -0.187 4.187 15 C -0.033 4.033 16 C -0.124 4.124 17 H 0.159 0.841 18 C -0.159 4.159 19 C -0.054 4.054 20 Cl -0.082 7.082 21 Cl -0.070 7.070 22 H 0.071 0.929 23 H 0.036 0.964 24 H -0.028 1.028 25 H 0.110 0.890 26 H 0.032 0.968 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.407 -12.974 0.302 16.028 hybrid contribution -0.824 0.857 0.968 1.533 sum 8.583 -12.116 1.270 14.903 Atomic orbital electron populations 1.70089 1.07663 1.27598 1.52250 1.25838 0.95619 1.02904 0.95177 0.85494 0.78710 0.78772 0.78338 1.19990 1.21263 1.18684 1.21471 0.93652 0.90977 1.49181 0.91780 1.19368 0.90128 0.88585 0.93412 1.62014 1.30596 1.05086 1.27777 1.21732 0.96532 0.92929 0.93157 1.22168 0.95960 1.02601 0.96161 1.23000 0.93983 1.03031 1.03358 1.23036 1.02013 0.91889 1.01779 1.21500 0.93861 0.97491 0.90459 1.23240 0.94052 1.00415 0.94709 0.84142 1.24151 0.96540 0.99001 0.96163 1.26982 1.09259 0.85365 0.83776 1.98748 1.91665 1.85069 1.32741 1.98731 1.88641 1.21345 1.98267 0.92943 0.96413 1.02810 0.88998 0.96806 0.88627 0.90125 0.89454 0.87240 0.87633 0.95663 0.91108 0.83881 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.51 -28.35 8.60 25.60 0.22 -28.13 16 8 H 0.06 3.43 7.66 -2.91 -0.02 3.41 16 9 C 0.21 10.91 4.59 85.55 0.39 11.30 16 10 N -0.53 -21.43 4.38 -900.79 -3.95 -25.38 16 11 C 0.08 2.85 5.09 86.30 0.44 3.29 16 12 C -0.15 -4.86 4.97 -10.79 -0.05 -4.91 16 13 C -0.20 -6.15 9.98 30.62 0.31 -5.84 16 14 C -0.15 -3.64 10.26 30.62 0.31 -3.33 16 15 C 0.10 3.38 4.15 86.30 0.36 3.74 16 16 C -0.10 -2.76 5.43 -10.80 -0.06 -2.82 16 17 H 0.14 3.37 6.40 -2.39 -0.02 3.35 16 18 C -0.12 -2.67 9.86 30.59 0.30 -2.37 16 19 C 0.00 -0.05 3.62 30.59 0.11 0.06 16 20 Cl -0.11 -2.98 28.23 -2.72 -0.08 -3.06 16 21 Cl -0.10 -2.12 29.29 -2.72 -0.08 -2.20 16 22 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 23 H 0.02 0.99 6.95 -2.38 -0.02 0.98 16 24 H -0.05 -2.62 8.00 -2.39 -0.02 -2.64 16 25 H 0.09 2.56 6.02 -2.39 -0.01 2.54 16 26 H 0.01 0.50 7.79 -2.38 -0.02 0.48 16 27 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.08 2.63 8.03 -2.39 -0.02 2.61 16 29 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 33 H 0.07 2.81 7.05 -2.39 -0.02 2.79 16 34 H 0.14 2.40 8.14 -2.38 -0.02 2.39 16 35 H 0.12 2.76 8.03 -2.39 -0.02 2.74 16 Total: -1.00 -61.14 321.00 2.07 -59.07 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.07 Total: 9.80 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 2.79 Total: -28.41 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.66 Total: -81.04 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -5.10 SS G_CDS: -0.16 Total: -5.25 kcal Total: -61.14 2.07 -59.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.654 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds