Wall clock time and date at job start Mon Mar 30 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 O 1.45202 * 109.47088 * 239.99621 * 2 1 3 13 13 C 1.34730 * 116.99854 * 90.00099 * 12 2 1 14 14 O 1.21496 * 119.99732 * 0.02562 * 13 12 2 15 15 C 1.47575 * 119.99856 * 179.97438 * 13 12 2 16 16 C 1.40045 * 119.97477 * 359.73022 * 15 13 12 17 17 C 1.36579 * 120.46111 * 179.75883 * 16 15 13 18 18 C 1.38824 * 120.21116 * 0.51390 * 17 16 15 19 19 O 1.35181 * 133.63982 * 179.76905 * 18 17 16 20 20 C 1.34401 * 108.24452 * 179.97438 * 19 18 17 21 21 O 1.35178 * 124.90488 * 180.02562 * 20 19 18 22 22 N 1.30587 * 110.18111 * 359.97438 * 20 19 18 23 23 C 1.36219 * 108.68277 * 359.97438 * 22 20 19 24 24 C 1.39200 * 133.66274 * 180.02562 * 23 22 20 25 25 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 27 27 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.08004 * 119.76928 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.89504 * 180.25527 * 17 16 15 31 31 H 0.96700 * 113.99895 * 359.97438 * 21 20 19 32 32 H 1.08004 * 120.26181 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0667 -2.2852 14 8 1.9978 1.2611 -2.2542 15 6 2.7097 -0.5611 -3.5269 16 6 2.9696 -1.9369 -3.5600 17 6 3.4203 -2.5290 -4.7052 18 6 3.6355 -1.7688 -5.8467 19 8 4.0691 -2.0601 -7.0935 20 6 4.0865 -0.9227 -7.8094 21 8 4.4657 -0.8289 -9.1035 22 7 3.6830 0.0785 -7.0743 23 6 3.3834 -0.3870 -5.8297 24 6 2.9181 0.2159 -4.6645 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.7088 1.1615 3.4843 29 1 2.8093 -2.5343 -2.6746 30 1 3.6139 -3.5914 -4.7216 31 1 4.7354 -1.6704 -9.4962 32 1 2.7226 1.2778 -4.6417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805882423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:48 Heat of formation + Delta-G solvation = -84.414955 kcal Electronic energy + Delta-G solvation = -20322.423789 eV Core-core repulsion = 16829.478751 eV Total energy + Delta-G solvation = -3492.945038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.56126 -39.80234 -38.69828 -37.55890 -35.71148 -34.97002 -33.28360 -31.06775 -30.01713 -29.24238 -25.37035 -24.89164 -23.59548 -22.24316 -21.79084 -20.45383 -19.62716 -18.00173 -17.58647 -17.52023 -16.65985 -16.10635 -15.56626 -15.17830 -15.03617 -14.71292 -14.23424 -14.13919 -14.11751 -13.28167 -12.83698 -12.71431 -12.23005 -11.97074 -11.68152 -11.35014 -11.21345 -11.07388 -10.86949 -10.67222 -10.42045 -10.30475 -9.85136 -9.59008 -9.00611 -8.94685 -8.53385 -8.50895 -6.20366 -4.27753 0.57332 0.60976 1.60296 2.16598 2.67274 2.87794 3.25322 3.28551 3.30532 3.50482 3.76593 4.21319 4.30320 4.59600 4.77678 4.92642 5.01172 5.12795 5.23183 5.60849 5.81708 5.84726 6.05938 6.17663 6.28654 6.44928 6.61591 6.87137 6.88161 7.09571 7.39996 7.55760 7.69432 7.88438 8.10048 8.54469 8.82630 9.37607 10.87055 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.003456 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.488036 B = 8099.223143 C = 8482.114302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.349 6.349 13 C 0.499 3.501 14 O -0.510 6.510 15 C -0.102 4.102 16 C -0.043 4.043 17 C -0.097 4.097 18 C 0.028 3.972 19 O -0.244 6.244 20 C 0.431 3.569 21 O -0.391 6.391 22 N -0.466 5.466 23 C 0.031 3.969 24 C -0.003 4.003 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.424 0.576 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -8.284 -18.143 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.200 1.200 12 O -0.265 6.265 13 C 0.342 3.658 14 O -0.401 6.401 15 C -0.104 4.104 16 C -0.061 4.061 17 C -0.116 4.116 18 C -0.022 4.022 19 O -0.141 6.141 20 C 0.181 3.819 21 O -0.191 6.191 22 N -0.213 5.213 23 C -0.079 4.079 24 C -0.022 4.022 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.180 0.820 30 H 0.161 0.839 31 H 0.282 0.718 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.307 -6.646 -18.174 20.066 hybrid contribution 0.514 -1.535 0.559 1.713 sum 5.821 -8.181 -17.615 20.276 Atomic orbital electron populations 1.22178 0.97408 1.00232 1.01545 1.20703 0.91471 0.94037 0.77362 0.93341 1.20972 1.32722 1.13595 0.88797 0.91249 1.24888 0.94899 0.95087 0.99074 1.69890 1.35895 1.22458 1.24363 0.86313 0.79221 0.79504 0.80977 1.21047 1.19924 1.19963 1.86527 1.75780 1.43147 1.21019 1.20697 0.75300 0.85255 0.84525 1.90801 1.48523 1.16100 1.84680 1.19239 1.04541 0.94084 0.92562 1.21165 0.93577 0.93749 0.97653 1.19566 1.03533 1.00268 0.88187 1.20162 1.02451 0.95686 0.83884 1.84454 1.71369 1.36236 1.21996 1.23007 0.93696 0.79444 0.85795 1.85184 1.81794 1.37541 1.14598 1.70896 1.22456 1.25899 1.02013 1.19345 1.05225 0.90789 0.92541 1.20361 0.93140 1.01250 0.87436 0.94321 0.88159 0.96389 0.92282 0.82038 0.83893 0.71848 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.33 37.16 0.35 -3.54 16 2 C 0.22 5.69 2.56 -27.89 -0.07 5.61 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.32 8.90 -34.44 -0.31 -14.62 16 5 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 O -0.35 -7.96 9.09 -40.57 -0.37 -8.33 16 13 C 0.50 10.36 7.87 34.54 0.27 10.63 16 14 O -0.51 -11.99 15.59 -19.26 -0.30 -12.29 16 15 C -0.10 -1.65 5.87 -105.01 -0.62 -2.26 16 16 C -0.04 -0.56 9.54 -39.50 -0.38 -0.94 16 17 C -0.10 -1.07 9.99 -39.96 -0.40 -1.47 16 18 C 0.03 0.35 7.42 -38.52 -0.29 0.06 16 19 O -0.24 -2.60 10.78 -20.33 -0.22 -2.82 16 20 C 0.43 4.67 9.53 52.23 0.50 5.17 16 21 O -0.39 -2.61 13.62 -40.52 -0.55 -3.16 16 22 N -0.47 -6.71 11.38 -12.82 -0.15 -6.85 16 23 C 0.03 0.45 7.22 -84.72 -0.61 -0.16 16 24 C 0.00 -0.04 9.64 -38.82 -0.37 -0.42 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.16 1.97 7.58 -52.48 -0.40 1.57 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.42 -0.06 9.06 45.56 0.41 0.35 16 32 H 0.15 2.38 7.64 -52.48 -0.40 1.98 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -33.25 293.80 -5.46 -38.71 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -1.89 Total: -0.75 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.02 Total: -0.31 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.48 Total: -31.14 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.44 Total: -26.59 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.25 -5.46 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805882423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.709 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds