Wall clock time and date at job start Mon Mar 30 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 O 1.45202 * 109.47088 * 239.99621 * 2 1 3 13 13 C 1.34730 * 116.99854 * 90.00099 * 12 2 1 14 14 O 1.21496 * 119.99732 * 0.02562 * 13 12 2 15 15 C 1.47575 * 119.99856 * 179.97438 * 13 12 2 16 16 C 1.40045 * 119.97477 * 359.73022 * 15 13 12 17 17 C 1.36579 * 120.46111 * 179.75883 * 16 15 13 18 18 C 1.38824 * 120.21116 * 0.51390 * 17 16 15 19 19 O 1.35181 * 133.63982 * 179.76905 * 18 17 16 20 20 C 1.34401 * 108.24452 * 179.97438 * 19 18 17 21 21 O 1.35178 * 124.90488 * 180.02562 * 20 19 18 22 22 N 1.30587 * 110.18111 * 359.97438 * 20 19 18 23 23 C 1.36219 * 108.68277 * 359.97438 * 22 20 19 24 24 C 1.39200 * 133.66274 * 180.02562 * 23 22 20 25 25 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 27 27 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.08004 * 119.76928 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.89504 * 180.25527 * 17 16 15 31 31 H 0.96700 * 113.99895 * 359.97438 * 21 20 19 32 32 H 1.08004 * 120.26181 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0667 -2.2852 14 8 1.9978 1.2611 -2.2542 15 6 2.7097 -0.5611 -3.5269 16 6 2.9696 -1.9369 -3.5600 17 6 3.4203 -2.5290 -4.7052 18 6 3.6355 -1.7688 -5.8467 19 8 4.0691 -2.0601 -7.0935 20 6 4.0865 -0.9227 -7.8094 21 8 4.4657 -0.8289 -9.1035 22 7 3.6830 0.0785 -7.0743 23 6 3.3834 -0.3870 -5.8297 24 6 2.9181 0.2159 -4.6645 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.7088 1.1615 3.4843 29 1 2.8093 -2.5343 -2.6746 30 1 3.6139 -3.5914 -4.7216 31 1 4.7354 -1.6704 -9.4962 32 1 2.7226 1.2778 -4.6417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805882423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:48 Heat of formation + Delta-G solvation = -110.530885 kcal Electronic energy + Delta-G solvation = -20323.556261 eV Core-core repulsion = 16829.478751 eV Total energy + Delta-G solvation = -3494.077510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.50048 -41.41827 -39.58507 -38.56912 -37.51411 -35.95494 -35.29888 -32.29830 -31.63526 -30.60791 -27.43927 -26.18818 -24.51963 -23.61873 -23.03256 -21.94036 -20.74259 -19.32847 -18.80332 -18.51376 -18.41004 -17.76119 -16.83847 -16.70655 -16.36022 -16.20865 -15.33242 -15.21144 -14.86290 -14.84414 -14.28506 -14.13402 -13.92070 -13.61003 -13.18530 -13.01587 -12.78718 -12.74841 -12.36476 -12.24884 -12.15657 -11.68263 -11.60938 -11.52557 -10.99160 -10.57561 -10.09592 -9.51746 -8.26112 -6.43120 -0.58973 -0.37809 0.73882 1.20969 1.44594 1.48234 1.49453 1.56485 1.69922 2.11773 2.43541 2.51743 3.05120 3.20231 3.65319 3.73510 3.76420 3.99763 4.09667 4.48464 4.57908 4.73410 4.80811 4.83834 4.91273 4.97990 5.11127 5.17305 5.31505 5.50060 5.63353 5.77690 5.90025 6.05312 6.60632 6.63155 6.87925 7.28001 8.81606 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.003456 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.488036 B = 8099.223143 C = 8482.114302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.281 1.281 10 H -0.261 1.261 11 H -0.268 1.268 12 O -0.347 6.347 13 C 0.497 3.503 14 O -0.548 6.548 15 C -0.116 4.116 16 C -0.043 4.043 17 C -0.069 4.069 18 C 0.032 3.968 19 O -0.227 6.227 20 C 0.457 3.543 21 O -0.379 6.379 22 N -0.516 5.516 23 C 0.019 3.981 24 C -0.014 4.014 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.022 0.978 28 H 0.271 0.729 29 H 0.173 0.827 30 H 0.188 0.812 31 H 0.454 0.546 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -11.313 -19.383 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.808 3.192 9 H -0.206 1.206 10 H -0.185 1.185 11 H -0.193 1.193 12 O -0.263 6.263 13 C 0.343 3.657 14 O -0.441 6.441 15 C -0.118 4.118 16 C -0.062 4.062 17 C -0.088 4.088 18 C -0.018 4.018 19 O -0.124 6.124 20 C 0.207 3.793 21 O -0.185 6.185 22 N -0.264 5.264 23 C -0.091 4.091 24 C -0.033 4.033 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.190 0.810 30 H 0.206 0.794 31 H 0.317 0.683 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.532 -9.713 -19.477 22.724 hybrid contribution 0.213 -0.585 0.667 0.912 sum 6.745 -10.298 -18.810 22.480 Atomic orbital electron populations 1.22009 0.96654 1.00697 1.00818 1.20420 0.92097 0.92202 0.78816 0.97431 1.21282 1.33486 1.14075 0.89603 0.90772 1.25856 0.94717 0.95659 1.02237 1.70025 1.36632 1.23719 1.25283 0.85204 0.78769 0.78680 0.76593 1.20597 1.18545 1.19299 1.86502 1.76088 1.42809 1.20887 1.21511 0.74178 0.84949 0.85079 1.90773 1.50315 1.17799 1.85232 1.18932 1.06919 0.95619 0.90377 1.21250 0.93744 0.92087 0.99077 1.19897 1.00582 1.01969 0.86304 1.20372 1.01743 0.94825 0.84849 1.84498 1.70953 1.35791 1.21111 1.23050 0.91007 0.78707 0.86543 1.85224 1.80877 1.40118 1.12249 1.70830 1.25182 1.27765 1.02610 1.19318 1.05404 0.91998 0.92361 1.20176 0.94358 1.00645 0.88145 0.93084 0.90040 0.95892 0.92032 0.81010 0.79447 0.68273 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.39 9.33 71.98 0.67 -6.72 16 2 C 0.22 11.87 2.56 29.85 0.08 11.95 16 3 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 4 C -0.55 -30.37 8.90 25.60 0.23 -30.14 16 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 8 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 9 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 O -0.35 -16.30 9.09 -56.41 -0.51 -16.81 16 13 C 0.50 21.59 7.87 70.29 0.55 22.14 16 14 O -0.55 -27.52 15.59 19.85 0.31 -27.21 16 15 C -0.12 -3.82 5.87 -20.11 -0.12 -3.94 16 16 C -0.04 -1.06 9.54 22.32 0.21 -0.84 16 17 C -0.07 -1.28 9.99 22.02 0.22 -1.06 16 18 C 0.03 0.72 7.42 22.96 0.17 0.89 16 19 O -0.23 -3.98 10.78 9.95 0.11 -3.87 16 20 C 0.46 8.63 9.53 130.43 1.24 9.87 16 21 O -0.38 -3.69 13.62 -62.31 -0.85 -4.54 16 22 N -0.52 -14.34 11.38 -422.84 -4.81 -19.15 16 23 C 0.02 0.54 7.22 39.24 0.28 0.83 16 24 C -0.01 -0.44 9.64 22.76 0.22 -0.22 16 25 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 27 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 29 H 0.17 3.84 7.58 -2.91 -0.02 3.82 16 30 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.45 -2.19 9.06 -74.06 -0.67 -2.86 16 32 H 0.14 4.68 7.64 -2.91 -0.02 4.65 16 Total: -1.00 -74.81 293.80 1.24 -73.57 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 0.52 Total: 2.25 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.21 Total: 4.02 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -4.57 Total: -71.47 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.94 Total: -52.44 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.81 1.24 -73.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805882423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.964 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds