Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.39223 * 2 1 4 4 C 1.54575 * 110.44113 * 122.42305 * 2 1 3 5 5 C 1.54482 * 102.14572 * 145.71348 * 4 2 1 6 6 H 1.08999 * 110.37111 * 103.49220 * 5 4 2 7 7 N 1.46505 * 110.37125 * 225.70424 * 5 4 2 8 8 S 1.65599 * 120.00620 * 215.00377 * 7 5 4 9 9 O 1.42097 * 104.27844 * 181.07351 * 8 7 5 10 10 O 1.42105 * 104.27471 * 308.93148 * 8 7 5 11 11 C 1.81398 * 104.44815 * 64.99736 * 8 7 5 12 12 C 1.52999 * 109.46876 * 180.02562 * 11 8 7 13 13 C 1.50703 * 109.47008 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00051 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00071 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47565 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47167 * 120.00135 * 17 15 13 20 20 H 1.48497 * 109.46852 * 239.99743 * 17 15 13 21 21 C 1.51325 * 104.82939 * 344.65476 * 5 4 2 22 22 O 1.20828 * 125.09634 * 177.70593 * 21 5 4 23 23 O 1.34064 * 109.80940 * 357.68626 * 21 5 4 24 24 H 1.08992 * 109.46970 * 299.30084 * 1 2 3 25 25 H 1.09000 * 109.47019 * 59.30098 * 1 2 3 26 26 H 1.09006 * 109.46688 * 179.29777 * 1 2 3 27 27 H 1.09000 * 110.86397 * 263.88215 * 4 2 1 28 28 H 1.09000 * 110.86444 * 27.54425 * 4 2 1 29 29 H 0.97006 * 119.99020 * 35.00105 * 7 5 4 30 30 H 1.09002 * 109.47242 * 300.00403 * 11 8 7 31 31 H 1.09002 * 109.47100 * 60.00265 * 11 8 7 32 32 H 1.09001 * 109.46991 * 299.99718 * 12 11 8 33 33 H 1.09002 * 109.47215 * 60.00121 * 12 11 8 34 34 H 0.96997 * 119.99633 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0699 -0.7766 1.2226 5 6 3.3526 -1.4244 0.6557 6 1 4.2347 -0.8867 1.0033 7 7 3.4284 -2.8339 1.0481 8 16 4.8975 -3.5246 1.3752 9 8 4.5877 -4.8755 1.6884 10 8 5.6969 -3.1990 0.2463 11 6 5.4910 -2.6493 2.8490 12 6 6.8581 -3.2035 3.2552 13 6 7.3515 -2.4759 4.4793 14 1 6.7500 -1.6966 4.9234 15 6 8.5704 -2.8060 5.0330 16 7 9.3021 -3.7561 4.4931 17 14 9.1816 -1.9046 6.5506 18 1 8.1787 -0.8892 6.9608 19 1 9.3823 -2.8759 7.6559 20 1 10.4694 -1.2328 6.2421 21 6 3.2180 -1.2999 -0.8464 22 8 4.0463 -1.6577 -1.6501 23 8 2.0419 -0.7336 -1.1518 24 1 -0.3633 0.5029 0.8961 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0277 -0.0126 27 1 2.3072 -0.0964 2.0407 28 1 1.3592 -1.5383 1.5434 29 1 2.6179 -3.3625 1.1163 30 1 5.5815 -1.5857 2.6282 31 1 4.7835 -2.7919 3.6658 32 1 6.7679 -4.2671 3.4760 33 1 7.5654 -3.0606 2.4383 34 1 10.1597 -3.9880 4.8824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809383026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -191.518335 kcal Electronic energy + Delta-G solvation = -19913.877927 eV Core-core repulsion = 16551.732489 eV Total energy + Delta-G solvation = -3362.145438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.12087 -38.74432 -38.17990 -37.04664 -36.51098 -35.88318 -33.32305 -33.12421 -30.18407 -27.59688 -25.66873 -23.64878 -23.05517 -22.16102 -20.43961 -19.25284 -18.71965 -18.04280 -17.97845 -17.76087 -17.00253 -16.58196 -16.50222 -15.76019 -15.31381 -15.00817 -14.83357 -14.46456 -14.14256 -13.72412 -13.59715 -13.21581 -13.11655 -13.05762 -12.94721 -12.90628 -12.75296 -12.71721 -12.37800 -12.24632 -12.06629 -11.93591 -11.70294 -11.43843 -11.10370 -10.63982 -10.40115 -8.24023 -6.38104 -0.78262 0.87571 1.43812 1.44265 1.57358 1.74047 2.19162 2.39962 2.71951 2.91085 3.10295 3.18969 3.25121 3.67219 3.80641 3.91464 4.05430 4.17043 4.27949 4.41914 4.77225 4.85154 4.86952 4.98344 5.09865 5.28365 5.30243 5.33727 5.70646 5.75573 5.91631 6.06912 6.38528 6.76807 7.32548 8.88654 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.004518 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.656654 B = 6195.650064 C = 6704.193927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 H 0.123 0.877 4 C -0.145 4.145 5 C 0.087 3.913 6 H 0.143 0.857 7 N -1.087 6.087 8 S 2.602 3.398 9 O -0.995 6.995 10 O -0.989 6.989 11 C -0.577 4.577 12 C 0.016 3.984 13 C -0.534 4.534 14 H 0.083 0.917 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.975 3.025 18 H -0.250 1.250 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.459 3.541 22 O -0.483 6.483 23 O -0.361 6.361 24 H 0.112 0.888 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.148 0.852 28 H 0.120 0.880 29 H 0.431 0.569 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.006 0.994 33 H 0.004 0.996 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.163 11.713 -2.264 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.140 0.860 4 C -0.183 4.183 5 C -0.023 4.023 6 H 0.160 0.840 7 N -0.849 5.849 8 S 2.700 3.300 9 O -0.986 6.986 10 O -0.979 6.979 11 C -0.710 4.710 12 C -0.023 4.023 13 C -0.573 4.573 14 H 0.101 0.899 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.799 3.201 18 H -0.174 1.174 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.297 3.703 22 O -0.366 6.366 23 O -0.278 6.278 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.138 0.862 29 H 0.269 0.731 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.216 10.839 -3.406 23.190 hybrid contribution 0.592 -0.043 0.712 0.927 sum -19.623 10.795 -2.695 22.558 Atomic orbital electron populations 1.21968 0.89925 1.03935 1.04772 1.24252 0.97777 0.96066 0.80637 0.85972 1.23605 0.93724 1.02011 0.98989 1.22337 1.05529 0.83524 0.90933 0.83962 1.55314 1.26336 1.18870 1.84376 1.05136 0.73555 0.74353 0.76999 1.93513 1.83391 1.35048 1.86599 1.93593 1.69798 1.84934 1.49552 1.30264 1.08193 1.14296 1.18220 1.18861 0.89657 0.96128 0.97627 1.21566 1.04065 1.20204 1.11476 0.89890 1.26155 0.97133 0.95998 1.01207 1.70124 1.13238 1.31776 1.42550 0.85244 0.78417 0.78489 0.77953 1.17356 1.20667 1.20752 1.24128 0.79554 0.73984 0.92648 1.90790 1.40876 1.46246 1.58713 1.87064 1.34138 1.63208 1.43345 0.86930 0.91478 0.91641 0.83421 0.86171 0.73093 0.83218 0.82686 0.97610 0.97746 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.57 71.98 0.69 -0.07 16 2 C 0.07 0.61 4.17 31.13 0.13 0.74 16 3 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 4 C -0.14 -1.03 6.45 31.63 0.20 -0.83 16 5 C 0.09 1.63 3.41 44.95 0.15 1.79 16 6 H 0.14 2.31 7.26 -2.39 -0.02 2.29 16 7 N -1.09 -24.67 5.42 -169.56 -0.92 -25.59 16 8 S 2.60 91.30 5.38 -56.49 -0.30 90.99 16 9 O -1.00 -41.24 18.08 -127.65 -2.31 -43.54 16 10 O -0.99 -44.00 17.38 -126.48 -2.20 -46.20 16 11 C -0.58 -19.67 5.92 71.98 0.43 -19.24 16 12 C 0.02 0.82 4.98 29.85 0.15 0.97 16 13 C -0.53 -28.34 9.11 25.60 0.23 -28.11 16 14 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 15 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 16 N -0.94 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 18 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.46 12.66 8.21 71.43 0.59 13.24 16 22 O -0.48 -19.07 17.56 22.60 0.40 -18.67 16 23 O -0.36 -7.73 10.76 -50.16 -0.54 -8.27 16 24 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.12 0.49 7.61 -2.39 -0.02 0.47 16 29 H 0.43 7.37 8.62 -96.74 -0.83 6.54 16 30 H 0.15 4.13 7.51 -2.39 -0.02 4.11 16 31 H 0.16 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -88.63 308.18 -0.24 -88.87 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.29 Total: 6.10 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 3.03 Total: -31.42 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -0.63 Total: -81.92 kcal Atomic # 8 Polarization: -112.04 SS G_CDS: -4.65 Total: -116.69 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 91.30 SS G_CDS: -0.30 Total: 90.99 kcal Total: -88.63 -0.24 -88.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809383026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.649 kcal (2) G-P(sol) polarization free energy of solvation -88.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds