Wall clock time and date at job start Mon Mar 30 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.29282 * 2 1 4 4 C 1.54369 * 110.32378 * 122.12054 * 2 1 3 5 5 C 1.54471 * 103.04767 * 136.71287 * 4 2 1 6 6 H 1.09002 * 110.40663 * 241.47040 * 5 4 2 7 7 N 1.46506 * 110.40116 * 119.16335 * 5 4 2 8 8 S 1.65597 * 119.99791 * 146.63799 * 7 5 4 9 9 O 1.42101 * 104.27612 * 181.07220 * 8 7 5 10 10 O 1.42101 * 104.27805 * 308.92463 * 8 7 5 11 11 C 1.81397 * 104.45432 * 64.99519 * 8 7 5 12 12 C 1.52999 * 109.47238 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.46757 * 180.02562 * 12 11 8 14 14 H 1.07996 * 120.00022 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00186 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99852 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46912 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46990 * 119.99936 * 17 15 13 20 20 H 1.48498 * 109.47528 * 240.00511 * 17 15 13 21 21 C 1.51506 * 104.73232 * 0.31871 * 5 4 2 22 22 O 1.20829 * 125.94658 * 159.63667 * 21 5 4 23 23 O 1.34759 * 108.00538 * 339.76480 * 21 5 4 24 24 H 1.09007 * 109.46857 * 297.88095 * 1 2 3 25 25 H 1.09003 * 109.47363 * 57.87852 * 1 2 3 26 26 H 1.08999 * 109.47744 * 177.88161 * 1 2 3 27 27 H 1.09006 * 110.70090 * 18.32900 * 4 2 1 28 28 H 1.09003 * 110.85248 * 255.17584 * 4 2 1 29 29 H 0.96995 * 120.00050 * 326.35884 * 7 5 4 30 30 H 1.09000 * 109.46873 * 300.00475 * 11 8 7 31 31 H 1.09004 * 109.46684 * 59.99917 * 11 8 7 32 32 H 1.09002 * 109.47112 * 300.00009 * 12 11 8 33 33 H 1.08998 * 109.46926 * 60.00162 * 12 11 8 34 34 H 0.96999 * 120.00163 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0661 -0.7697 1.2260 5 6 3.2144 -1.6151 0.6321 6 1 3.0098 -2.6780 0.7609 7 7 4.4883 -1.2612 1.2632 8 16 5.6507 -2.4190 1.4882 9 8 6.7112 -1.7296 2.1357 10 8 4.9654 -3.4825 2.1352 11 6 6.1378 -2.9038 -0.1906 12 6 7.2210 -3.9817 -0.1161 13 6 7.6261 -4.3840 -1.5108 14 1 7.1581 -3.9171 -2.3648 15 6 8.5949 -5.3473 -1.6965 16 7 9.1652 -5.9154 -0.6565 17 14 9.0966 -5.8464 -3.4252 18 1 8.3110 -5.0647 -4.4137 19 1 10.5438 -5.5755 -3.6183 20 1 8.8340 -7.2952 -3.6180 21 6 3.2361 -1.2559 -0.8395 22 8 4.1669 -1.4116 -1.5940 23 8 2.0368 -0.7300 -1.1577 24 1 -0.3633 0.4806 0.9084 25 1 -0.3634 0.5464 -0.8704 26 1 -0.3634 -1.0269 -0.0380 27 1 1.2922 -1.4121 1.6463 28 1 2.4452 -0.0810 1.9811 29 1 4.6525 -0.3478 1.5455 30 1 5.2704 -3.2958 -0.7216 31 1 6.5265 -2.0346 -0.7213 32 1 8.0883 -3.5892 0.4149 33 1 6.8327 -4.8509 0.4148 34 1 9.8470 -6.5928 -0.7870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809383028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:31 Heat of formation + Delta-G solvation = -159.069843 kcal Electronic energy + Delta-G solvation = -20102.759346 eV Core-core repulsion = 16742.020980 eV Total energy + Delta-G solvation = -3360.738365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27163 -37.80544 -36.68567 -35.66441 -35.40933 -33.81868 -32.69212 -31.08685 -29.40082 -25.54981 -25.13112 -22.23325 -21.60310 -21.42202 -19.29662 -17.79622 -17.69635 -16.98097 -16.52936 -16.04840 -15.68148 -15.39068 -14.99709 -14.72519 -14.44978 -13.88325 -13.33685 -13.22723 -13.06796 -12.60093 -12.46688 -12.10104 -11.94164 -11.69457 -11.68031 -11.58106 -11.37273 -11.28319 -11.03203 -10.90721 -10.80136 -10.31480 -10.28879 -9.77092 -9.42982 -9.02475 -8.44283 -6.06340 -4.10516 0.69945 1.68382 2.89703 3.05184 3.30606 3.37681 3.43178 3.62014 3.86456 4.13142 4.17732 4.36608 4.44088 4.61806 4.66280 4.84158 4.99550 5.15280 5.29151 5.31435 5.42034 5.52234 5.63649 5.77158 5.91799 6.39400 6.61850 6.78944 7.25316 7.37577 7.41569 7.89163 8.25623 8.94023 9.53931 11.04891 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.005106 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.503480 B = 5482.613808 C = 6354.953673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.079 3.921 3 H 0.095 0.905 4 C -0.154 4.154 5 C 0.090 3.910 6 H 0.140 0.860 7 N -1.108 6.108 8 S 2.583 3.417 9 O -0.962 6.962 10 O -0.965 6.965 11 C -0.575 4.575 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.462 3.538 22 O -0.415 6.415 23 O -0.348 6.348 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.416 0.584 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.284 13.240 4.052 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 H 0.113 0.887 4 C -0.193 4.193 5 C -0.020 4.020 6 H 0.158 0.842 7 N -0.864 5.864 8 S 2.681 3.319 9 O -0.952 6.952 10 O -0.955 6.955 11 C -0.709 4.709 12 C -0.011 4.011 13 C -0.554 4.554 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.531 5.531 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.297 3.703 22 O -0.293 6.293 23 O -0.266 6.266 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.250 0.750 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.567 12.552 4.362 22.026 hybrid contribution 0.332 0.165 -1.385 1.434 sum -17.234 12.717 2.977 21.624 Atomic orbital electron populations 1.21929 0.91546 1.03993 1.03422 1.23658 0.96580 0.95413 0.82029 0.88681 1.23238 0.97917 1.00045 0.98090 1.22080 0.85907 1.03776 0.90272 0.84211 1.55879 1.27504 1.26593 1.76429 1.05995 0.73113 0.73521 0.79237 1.93562 1.54652 1.72886 1.74115 1.93541 1.73137 1.55335 1.73489 1.30407 1.10983 1.11151 1.18368 1.18995 0.91027 0.91036 1.00088 1.21076 1.21326 1.21609 0.91388 0.91798 1.25062 0.96068 0.96066 0.97344 1.69967 1.26717 1.26991 1.29475 0.86416 0.78388 0.78354 0.84183 1.19576 1.20849 1.20853 1.23938 0.80830 0.75102 0.90468 1.90827 1.31808 1.48337 1.58310 1.87384 1.33299 1.65633 1.40316 0.89934 0.91101 0.90935 0.87602 0.87752 0.74969 0.86067 0.85558 0.94886 0.94922 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.49 37.15 0.35 -0.31 16 2 C 0.08 0.51 4.13 -26.02 -0.11 0.40 16 3 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -0.96 6.51 -25.24 -0.16 -1.12 16 5 C 0.09 0.96 3.59 -67.91 -0.24 0.72 16 6 H 0.14 1.47 7.55 -51.93 -0.39 1.08 16 7 N -1.11 -13.56 5.38 -4.87 -0.03 -13.58 16 8 S 2.58 46.11 5.44 -107.50 -0.58 45.52 16 9 O -0.96 -19.78 18.08 -57.54 -1.04 -20.82 16 10 O -0.97 -19.37 17.43 -57.54 -1.00 -20.37 16 11 C -0.57 -11.83 4.71 37.16 0.18 -11.65 16 12 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 13 C -0.51 -14.80 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.46 6.01 8.16 36.40 0.30 6.31 16 22 O -0.41 -7.05 15.31 -18.30 -0.28 -7.33 16 23 O -0.35 -3.84 10.87 -40.26 -0.44 -4.28 16 24 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.11 0.49 7.82 -51.93 -0.41 0.08 16 28 H 0.10 0.47 7.81 -51.93 -0.41 0.07 16 29 H 0.42 3.93 8.65 -34.47 -0.30 3.63 16 30 H 0.12 2.37 7.09 -51.92 -0.37 2.00 16 31 H 0.13 2.50 7.94 -51.92 -0.41 2.09 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -37.48 304.54 -7.67 -45.15 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.36 Total: -0.83 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.24 Total: -18.63 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.71 Total: -39.93 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.76 Total: -52.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 46.11 SS G_CDS: -0.58 Total: 45.52 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.48 -7.67 -45.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809383028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.923 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds