Wall clock time and date at job start Mon Mar 30 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.29282 * 2 1 4 4 C 1.54369 * 110.32378 * 122.12054 * 2 1 3 5 5 C 1.54471 * 103.04767 * 136.71287 * 4 2 1 6 6 H 1.09002 * 110.40663 * 241.47040 * 5 4 2 7 7 N 1.46506 * 110.40116 * 119.16335 * 5 4 2 8 8 S 1.65597 * 119.99791 * 146.63799 * 7 5 4 9 9 O 1.42101 * 104.27612 * 181.07220 * 8 7 5 10 10 O 1.42101 * 104.27805 * 308.92463 * 8 7 5 11 11 C 1.81397 * 104.45432 * 64.99519 * 8 7 5 12 12 C 1.52999 * 109.47238 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.46757 * 180.02562 * 12 11 8 14 14 H 1.07996 * 120.00022 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00186 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99852 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46912 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46990 * 119.99936 * 17 15 13 20 20 H 1.48498 * 109.47528 * 240.00511 * 17 15 13 21 21 C 1.51506 * 104.73232 * 0.31871 * 5 4 2 22 22 O 1.20829 * 125.94658 * 159.63667 * 21 5 4 23 23 O 1.34759 * 108.00538 * 339.76480 * 21 5 4 24 24 H 1.09007 * 109.46857 * 297.88095 * 1 2 3 25 25 H 1.09003 * 109.47363 * 57.87852 * 1 2 3 26 26 H 1.08999 * 109.47744 * 177.88161 * 1 2 3 27 27 H 1.09006 * 110.70090 * 18.32900 * 4 2 1 28 28 H 1.09003 * 110.85248 * 255.17584 * 4 2 1 29 29 H 0.96995 * 120.00050 * 326.35884 * 7 5 4 30 30 H 1.09000 * 109.46873 * 300.00475 * 11 8 7 31 31 H 1.09004 * 109.46684 * 59.99917 * 11 8 7 32 32 H 1.09002 * 109.47112 * 300.00009 * 12 11 8 33 33 H 1.08998 * 109.46926 * 60.00162 * 12 11 8 34 34 H 0.96999 * 120.00163 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0661 -0.7697 1.2260 5 6 3.2144 -1.6151 0.6321 6 1 3.0098 -2.6780 0.7609 7 7 4.4883 -1.2612 1.2632 8 16 5.6507 -2.4190 1.4882 9 8 6.7112 -1.7296 2.1357 10 8 4.9654 -3.4825 2.1352 11 6 6.1378 -2.9038 -0.1906 12 6 7.2210 -3.9817 -0.1161 13 6 7.6261 -4.3840 -1.5108 14 1 7.1581 -3.9171 -2.3648 15 6 8.5949 -5.3473 -1.6965 16 7 9.1652 -5.9154 -0.6565 17 14 9.0966 -5.8464 -3.4252 18 1 8.3110 -5.0647 -4.4137 19 1 10.5438 -5.5755 -3.6183 20 1 8.8340 -7.2952 -3.6180 21 6 3.2361 -1.2559 -0.8395 22 8 4.1669 -1.4116 -1.5940 23 8 2.0368 -0.7300 -1.1577 24 1 -0.3633 0.4806 0.9084 25 1 -0.3634 0.5464 -0.8704 26 1 -0.3634 -1.0269 -0.0380 27 1 1.2922 -1.4121 1.6463 28 1 2.4452 -0.0810 1.9811 29 1 4.6525 -0.3478 1.5455 30 1 5.2704 -3.2958 -0.7216 31 1 6.5265 -2.0346 -0.7213 32 1 8.0883 -3.5892 0.4149 33 1 6.8327 -4.8509 0.4148 34 1 9.8470 -6.5928 -0.7870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809383028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:31 Heat of formation + Delta-G solvation = -188.832855 kcal Electronic energy + Delta-G solvation = -20104.049967 eV Core-core repulsion = 16742.020980 eV Total energy + Delta-G solvation = -3362.028986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12198 -38.80399 -38.26122 -37.14124 -36.51742 -35.90611 -33.30446 -33.13402 -30.16659 -27.61280 -25.81145 -23.63994 -22.83627 -22.27403 -20.65928 -19.26655 -18.72615 -18.40199 -17.91905 -17.08907 -17.00492 -16.85008 -16.54847 -15.97645 -15.71804 -15.12006 -14.65128 -14.49578 -14.04841 -13.72554 -13.60463 -13.30548 -13.22969 -13.08165 -12.96316 -12.90928 -12.83264 -12.71204 -12.46375 -12.26489 -12.08527 -12.03558 -11.75314 -11.43428 -11.11912 -10.66495 -10.44218 -8.28016 -6.41052 -0.79304 0.70575 1.37756 1.38436 1.52599 1.67740 2.20969 2.36415 2.66148 2.84361 3.04748 3.16988 3.18044 3.61823 3.86592 3.91302 4.07804 4.14592 4.26149 4.33041 4.75375 4.84016 4.86034 4.94736 5.06540 5.26288 5.28207 5.33452 5.66248 5.68075 5.90780 6.07280 6.28179 6.71573 7.28508 8.84392 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.005106 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.503480 B = 5482.613808 C = 6354.953673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.114 0.886 4 C -0.141 4.141 5 C 0.081 3.919 6 H 0.143 0.857 7 N -1.086 6.086 8 S 2.625 3.375 9 O -0.987 6.987 10 O -0.983 6.983 11 C -0.583 4.583 12 C 0.022 3.978 13 C -0.539 4.539 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.463 3.537 22 O -0.467 6.467 23 O -0.363 6.363 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.434 0.566 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 14.567 4.242 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 H 0.132 0.868 4 C -0.180 4.180 5 C -0.029 4.029 6 H 0.160 0.840 7 N -0.848 5.848 8 S 2.720 3.280 9 O -0.978 6.978 10 O -0.973 6.973 11 C -0.715 4.715 12 C -0.016 4.016 13 C -0.578 4.578 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.571 5.571 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.199 1.199 21 C 0.300 3.700 22 O -0.349 6.349 23 O -0.280 6.280 24 H 0.129 0.871 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.272 0.728 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.580 13.897 4.548 24.438 hybrid contribution 0.802 -0.157 -1.398 1.619 sum -18.778 13.740 3.150 23.480 Atomic orbital electron populations 1.21989 0.89757 1.04194 1.04726 1.24123 0.97965 0.95766 0.80476 0.86829 1.23371 0.96314 1.00075 0.98254 1.22418 0.86272 1.05082 0.89091 0.83992 1.55279 1.26898 1.26536 1.76111 1.04453 0.72975 0.73488 0.77057 1.93521 1.56750 1.73445 1.74056 1.93517 1.73575 1.57092 1.73108 1.30372 1.09436 1.09532 1.22120 1.18832 0.92033 0.92073 0.98712 1.21491 1.21764 1.22032 0.92533 0.91737 1.26051 0.95931 0.95924 1.01965 1.70085 1.27357 1.27634 1.31980 0.85294 0.78238 0.78261 0.78637 1.18808 1.19935 1.19853 1.24303 0.80687 0.74032 0.90934 1.90798 1.33877 1.50500 1.59764 1.87374 1.32188 1.65610 1.42869 0.87120 0.91418 0.91185 0.85169 0.85123 0.72808 0.85438 0.85201 0.97180 0.96987 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.49 71.98 0.68 -0.09 16 2 C 0.07 0.68 4.13 31.06 0.13 0.81 16 3 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.14 -1.18 6.51 31.56 0.21 -0.98 16 5 C 0.08 1.56 3.59 45.00 0.16 1.72 16 6 H 0.14 2.74 7.55 -2.39 -0.02 2.72 16 7 N -1.09 -24.53 5.38 -169.33 -0.91 -25.44 16 8 S 2.62 93.15 5.44 -56.49 -0.31 92.85 16 9 O -0.99 -40.46 18.08 -127.65 -2.31 -42.77 16 10 O -0.98 -39.00 17.43 -127.65 -2.22 -41.22 16 11 C -0.58 -24.73 4.71 71.98 0.34 -24.39 16 12 C 0.02 1.23 4.98 29.85 0.15 1.38 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.71 7.74 -2.91 -0.02 3.68 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 17 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.46 11.66 8.16 71.49 0.58 12.24 16 22 O -0.47 -16.11 15.31 21.52 0.33 -15.78 16 23 O -0.36 -7.43 10.87 -57.07 -0.62 -8.05 16 24 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.13 0.56 7.82 -2.38 -0.02 0.54 16 28 H 0.13 0.49 7.81 -2.39 -0.02 0.47 16 29 H 0.43 6.98 8.65 -96.75 -0.84 6.15 16 30 H 0.13 5.16 7.09 -2.39 -0.02 5.14 16 31 H 0.13 5.32 7.94 -2.39 -0.02 5.31 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -83.65 304.54 -0.50 -84.15 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.28 Total: 6.90 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 2.94 Total: -40.59 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -0.63 Total: -83.04 kcal Atomic # 8 Polarization: -103.00 SS G_CDS: -4.82 Total: -107.83 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 93.15 SS G_CDS: -0.31 Total: 92.85 kcal Total: -83.65 -0.50 -84.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809383028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.680 kcal (2) G-P(sol) polarization free energy of solvation -83.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds