Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 110.32577 * 2 1 4 4 S 1.65600 * 119.99894 * 177.23962 * 3 2 1 5 5 O 1.42102 * 104.27529 * 306.46027 * 4 3 2 6 6 O 1.42100 * 104.27753 * 178.60200 * 4 3 2 7 7 C 1.81402 * 104.44964 * 62.53096 * 4 3 2 8 8 C 1.52998 * 109.46954 * 171.99119 * 7 4 3 9 9 C 1.50701 * 109.47254 * 179.97438 * 8 7 4 10 10 H 1.08006 * 119.99983 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00353 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00152 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.46931 * 89.99837 * 13 11 9 15 15 H 1.48505 * 109.46764 * 330.00092 * 13 11 9 16 16 H 1.48500 * 109.47080 * 210.00278 * 13 11 9 17 17 C 1.54496 * 110.36643 * 122.23383 * 2 1 3 18 18 C 1.54570 * 102.14425 * 134.29441 * 17 2 1 19 19 O 1.45841 * 104.44485 * 333.15046 * 18 17 2 20 20 C 1.34298 * 109.95978 * 30.55485 * 19 18 17 21 21 O 1.20826 * 125.22785 * 159.24774 * 20 19 18 22 22 H 1.08998 * 109.46905 * 54.65095 * 1 2 3 23 23 H 1.09004 * 109.47319 * 174.64584 * 1 2 3 24 24 H 1.09000 * 109.47696 * 294.64818 * 1 2 3 25 25 H 0.96998 * 119.99973 * 357.22736 * 3 2 1 26 26 H 1.09001 * 109.46963 * 51.99469 * 7 4 3 27 27 H 1.09000 * 109.47206 * 291.98800 * 7 4 3 28 28 H 1.09006 * 109.47300 * 60.00037 * 8 7 4 29 29 H 1.09005 * 109.47201 * 300.00196 * 8 7 4 30 30 H 0.96999 * 119.99288 * 0.02562 * 12 11 9 31 31 H 1.08994 * 110.86981 * 252.45855 * 17 2 1 32 32 H 1.09002 * 110.86472 * 15.92835 * 17 2 1 33 33 H 1.08999 * 110.43913 * 91.89182 * 18 17 2 34 34 H 1.09002 * 110.44219 * 214.28708 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0389 1.3738 0.0000 4 16 3.6698 1.6526 0.0691 5 8 4.1019 0.9235 1.2097 6 8 3.7859 3.0679 0.0170 7 6 4.3217 0.9041 -1.4493 8 6 5.7997 1.2682 -1.6035 9 6 6.3415 0.6459 -2.8645 10 1 5.6960 0.0506 -3.4935 11 6 7.6608 0.8373 -3.2160 12 7 8.4468 1.5625 -2.4505 13 14 8.3322 0.0665 -4.7796 14 1 8.1522 1.0090 -5.9129 15 1 7.6008 -1.1944 -5.0634 16 1 9.7773 -0.2279 -4.6053 17 6 2.0677 -0.7725 1.2252 18 6 3.1702 -1.6541 0.5955 19 8 2.7465 -1.8333 -0.7885 20 6 2.0568 -0.7569 -1.1998 21 8 1.8827 -0.4394 -2.3526 22 1 -0.3633 0.5946 -0.8382 23 1 -0.3634 -1.0232 -0.0959 24 1 -0.3634 0.4286 0.9340 25 1 1.4206 2.1200 -0.0406 26 1 3.7638 1.2788 -2.3076 27 1 4.2183 -0.1795 -1.3936 28 1 6.3576 0.8936 -0.7452 29 1 5.9031 2.3519 -1.6591 30 1 8.0982 1.9624 -1.6384 31 1 2.4906 -0.0883 1.9607 32 1 1.2846 -1.3849 1.6723 33 1 4.1335 -1.1457 0.6358 34 1 3.2265 -2.6157 1.1058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810103235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -153.149708 kcal Electronic energy + Delta-G solvation = -21157.652479 eV Core-core repulsion = 17797.170830 eV Total energy + Delta-G solvation = -3360.481649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49888 -37.66026 -36.91905 -36.24679 -35.74427 -34.28012 -31.25354 -31.09380 -29.59660 -25.66864 -25.11845 -22.79139 -22.04558 -20.77993 -19.38553 -18.08640 -17.61790 -17.00014 -16.76918 -16.18337 -15.84648 -15.42058 -14.97164 -14.55393 -14.16275 -13.76629 -13.61400 -13.33709 -12.92940 -12.84038 -12.62940 -12.29653 -12.11490 -11.91509 -11.81332 -11.71889 -11.18549 -11.11388 -11.02923 -10.66562 -10.51561 -10.47416 -10.31871 -10.08087 -9.48838 -8.67964 -8.44509 -6.46684 -4.18922 0.43637 1.71078 2.77600 3.04364 3.41888 3.45271 3.54333 3.61631 3.83381 4.04152 4.28289 4.33145 4.48907 4.53052 4.91384 4.95515 5.22014 5.27600 5.35969 5.38060 5.44345 5.56771 5.64133 5.73163 5.79541 6.27339 6.54636 6.73514 6.91087 7.01827 7.25246 7.96732 8.34318 8.74420 9.52566 10.93215 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.006556 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.678996 B = 4269.649109 C = 4774.578337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.120 3.880 3 N -1.102 6.102 4 S 2.578 3.422 5 O -0.962 6.962 6 O -0.954 6.954 7 C -0.591 4.591 8 C 0.021 3.979 9 C -0.597 4.597 10 H 0.057 0.943 11 C 0.017 3.983 12 N -0.907 5.907 13 Si 1.075 2.925 14 H -0.286 1.286 15 H -0.287 1.287 16 H -0.282 1.282 17 C -0.180 4.180 18 C 0.033 3.967 19 O -0.338 6.338 20 C 0.456 3.544 21 O -0.423 6.423 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.422 0.578 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.022 0.978 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 -5.211 8.670 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 N -0.861 5.861 4 S 2.677 3.323 5 O -0.952 6.952 6 O -0.944 6.944 7 C -0.725 4.725 8 C -0.018 4.018 9 C -0.637 4.637 10 H 0.076 0.924 11 C -0.187 4.187 12 N -0.542 5.542 13 Si 0.902 3.098 14 H -0.212 1.212 15 H -0.213 1.213 16 H -0.208 1.208 17 C -0.218 4.218 18 C -0.041 4.041 19 O -0.254 6.254 20 C 0.291 3.709 21 O -0.303 6.303 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.257 0.743 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.715 -5.085 7.818 17.422 hybrid contribution -1.894 0.174 0.415 1.947 sum -16.609 -4.912 8.233 19.178 Atomic orbital electron populations 1.21891 0.89312 1.04044 1.04322 1.21437 0.98846 0.83050 0.93839 1.55756 1.27279 1.10989 1.92038 1.06068 0.72650 0.75315 0.78300 1.93492 1.80400 1.73981 1.47309 1.93581 1.84156 1.28649 1.88041 1.30608 1.11654 1.11987 1.18226 1.19048 0.84997 0.97757 0.99976 1.21876 0.98327 1.35714 1.07735 0.92447 1.25969 0.93520 0.95817 1.03431 1.70771 1.38487 1.30708 1.14255 0.83457 0.76019 0.75917 0.74358 1.21218 1.21257 1.20763 1.23758 0.99450 1.00613 0.98018 1.24617 0.99557 1.03139 0.76817 1.87158 1.66753 1.39820 1.31699 1.23564 0.76763 0.79938 0.90605 1.90750 1.54545 1.64646 1.20393 0.90416 0.90329 0.89942 0.74307 0.85110 0.86328 0.95973 0.95414 0.92029 0.85027 0.88017 0.87231 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.57 37.16 0.32 -0.75 16 2 C 0.12 1.38 1.17 -131.88 -0.15 1.22 16 3 N -1.10 -13.96 5.52 0.49 0.00 -13.96 16 4 S 2.58 44.79 5.18 -107.50 -0.56 44.23 16 5 O -0.96 -16.77 12.82 -57.54 -0.74 -17.51 16 6 O -0.95 -19.46 18.08 -57.54 -1.04 -20.50 16 7 C -0.59 -12.26 4.32 37.16 0.16 -12.10 16 8 C 0.02 0.55 4.29 -27.88 -0.12 0.43 16 9 C -0.60 -17.25 9.11 -34.44 -0.31 -17.56 16 10 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 11 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 12 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 13 Si 1.08 25.61 29.90 -169.99 -5.08 20.53 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.18 -1.78 5.76 -25.12 -0.14 -1.92 16 18 C 0.03 0.38 7.08 37.98 0.27 0.65 16 19 O -0.34 -5.03 10.37 -39.08 -0.41 -5.44 16 20 C 0.46 6.91 4.51 36.31 0.16 7.08 16 21 O -0.42 -7.67 17.04 -18.39 -0.31 -7.98 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.42 4.27 8.61 -34.47 -0.30 3.97 16 26 H 0.13 2.68 7.71 -51.92 -0.40 2.28 16 27 H 0.12 2.39 4.79 -51.92 -0.25 2.14 16 28 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 29 H 0.03 0.74 8.01 -51.93 -0.42 0.33 16 30 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 31 H 0.13 1.41 6.02 -51.93 -0.31 1.10 16 32 H 0.10 0.64 7.81 -51.93 -0.41 0.24 16 33 H 0.11 1.52 5.81 -51.93 -0.30 1.22 16 34 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -35.98 288.46 -6.93 -42.92 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.99 Total: 3.01 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 0.08 Total: -22.54 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.76 Total: -41.07 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -2.50 Total: -51.43 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Atomic # 16 Polarization: 44.79 SS G_CDS: -0.56 Total: 44.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.98 -6.93 -42.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810103235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.231 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds