Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 110.32577 * 2 1 4 4 S 1.65600 * 119.99894 * 177.23962 * 3 2 1 5 5 O 1.42102 * 104.27529 * 306.46027 * 4 3 2 6 6 O 1.42100 * 104.27753 * 178.60200 * 4 3 2 7 7 C 1.81402 * 104.44964 * 62.53096 * 4 3 2 8 8 C 1.52998 * 109.46954 * 171.99119 * 7 4 3 9 9 C 1.50701 * 109.47254 * 179.97438 * 8 7 4 10 10 H 1.08006 * 119.99983 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00353 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00152 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.46931 * 89.99837 * 13 11 9 15 15 H 1.48505 * 109.46764 * 330.00092 * 13 11 9 16 16 H 1.48500 * 109.47080 * 210.00278 * 13 11 9 17 17 C 1.54496 * 110.36643 * 122.23383 * 2 1 3 18 18 C 1.54570 * 102.14425 * 134.29441 * 17 2 1 19 19 O 1.45841 * 104.44485 * 333.15046 * 18 17 2 20 20 C 1.34298 * 109.95978 * 30.55485 * 19 18 17 21 21 O 1.20826 * 125.22785 * 159.24774 * 20 19 18 22 22 H 1.08998 * 109.46905 * 54.65095 * 1 2 3 23 23 H 1.09004 * 109.47319 * 174.64584 * 1 2 3 24 24 H 1.09000 * 109.47696 * 294.64818 * 1 2 3 25 25 H 0.96998 * 119.99973 * 357.22736 * 3 2 1 26 26 H 1.09001 * 109.46963 * 51.99469 * 7 4 3 27 27 H 1.09000 * 109.47206 * 291.98800 * 7 4 3 28 28 H 1.09006 * 109.47300 * 60.00037 * 8 7 4 29 29 H 1.09005 * 109.47201 * 300.00196 * 8 7 4 30 30 H 0.96999 * 119.99288 * 0.02562 * 12 11 9 31 31 H 1.08994 * 110.86981 * 252.45855 * 17 2 1 32 32 H 1.09002 * 110.86472 * 15.92835 * 17 2 1 33 33 H 1.08999 * 110.43913 * 91.89182 * 18 17 2 34 34 H 1.09002 * 110.44219 * 214.28708 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0389 1.3738 0.0000 4 16 3.6698 1.6526 0.0691 5 8 4.1019 0.9235 1.2097 6 8 3.7859 3.0679 0.0170 7 6 4.3217 0.9041 -1.4493 8 6 5.7997 1.2682 -1.6035 9 6 6.3415 0.6459 -2.8645 10 1 5.6960 0.0506 -3.4935 11 6 7.6608 0.8373 -3.2160 12 7 8.4468 1.5625 -2.4505 13 14 8.3322 0.0665 -4.7796 14 1 8.1522 1.0090 -5.9129 15 1 7.6008 -1.1944 -5.0634 16 1 9.7773 -0.2279 -4.6053 17 6 2.0677 -0.7725 1.2252 18 6 3.1702 -1.6541 0.5955 19 8 2.7465 -1.8333 -0.7885 20 6 2.0568 -0.7569 -1.1998 21 8 1.8827 -0.4394 -2.3526 22 1 -0.3633 0.5946 -0.8382 23 1 -0.3634 -1.0232 -0.0959 24 1 -0.3634 0.4286 0.9340 25 1 1.4206 2.1200 -0.0406 26 1 3.7638 1.2788 -2.3076 27 1 4.2183 -0.1795 -1.3936 28 1 6.3576 0.8936 -0.7452 29 1 5.9031 2.3519 -1.6591 30 1 8.0982 1.9624 -1.6384 31 1 2.4906 -0.0883 1.9607 32 1 1.2846 -1.3849 1.6723 33 1 4.1335 -1.1457 0.6358 34 1 3.2265 -2.6157 1.1058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810103235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -181.553467 kcal Electronic energy + Delta-G solvation = -21158.884159 eV Core-core repulsion = 17797.170830 eV Total energy + Delta-G solvation = -3361.713329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.56422 -38.90006 -38.36739 -37.43179 -37.14118 -36.38383 -33.12103 -32.25502 -30.40725 -27.27383 -26.51365 -24.20137 -23.58501 -21.89144 -20.73079 -19.54207 -18.98936 -18.58140 -18.12461 -17.62484 -17.15742 -16.82360 -16.05239 -15.73055 -15.61570 -15.35593 -15.19299 -14.92275 -14.30401 -14.07934 -13.75704 -13.57520 -13.43148 -13.33895 -12.98300 -12.90467 -12.66341 -12.55746 -12.42206 -12.37160 -12.19616 -11.99538 -11.92439 -11.52302 -10.88888 -10.68099 -10.52419 -8.81883 -6.55191 -1.03736 0.55421 1.47714 1.50693 1.56666 1.75949 1.99998 2.37874 2.49318 2.57853 2.91706 3.02373 3.15319 3.50690 3.55214 3.68086 3.77564 4.13669 4.15006 4.36862 4.59561 4.71275 4.73404 4.88067 4.90661 4.91185 5.01890 5.12740 5.51388 5.74478 5.81317 6.00631 6.11492 6.40031 7.25282 8.58391 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.006556 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.678996 B = 4269.649109 C = 4774.578337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.120 3.880 3 N -1.083 6.083 4 S 2.618 3.382 5 O -0.957 6.957 6 O -0.982 6.982 7 C -0.605 4.605 8 C 0.015 3.985 9 C -0.617 4.617 10 H 0.051 0.949 11 C -0.034 4.034 12 N -0.929 5.929 13 Si 1.121 2.879 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.274 1.274 17 C -0.172 4.172 18 C 0.019 3.981 19 O -0.357 6.357 20 C 0.445 3.555 21 O -0.466 6.466 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.437 0.563 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.257 0.743 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -6.252 9.784 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 N -0.847 5.847 4 S 2.712 3.288 5 O -0.946 6.946 6 O -0.972 6.972 7 C -0.735 4.735 8 C -0.024 4.024 9 C -0.656 4.656 10 H 0.070 0.930 11 C -0.233 4.233 12 N -0.565 5.565 13 Si 0.941 3.059 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.199 1.199 17 C -0.210 4.210 18 C -0.054 4.054 19 O -0.273 6.273 20 C 0.283 3.717 21 O -0.349 6.349 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.133 0.867 25 H 0.276 0.724 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.100 0.900 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.755 -6.125 8.931 19.950 hybrid contribution -1.335 0.446 0.149 1.415 sum -18.090 -5.679 9.080 21.023 Atomic orbital electron populations 1.22024 0.85757 1.05571 1.05995 1.21767 1.01365 0.81369 0.92686 1.55332 1.25419 1.12712 1.91251 1.04727 0.73610 0.73945 0.76511 1.93506 1.81392 1.73867 1.45862 1.93541 1.85398 1.30409 1.87891 1.30644 1.08491 1.12724 1.21626 1.18902 0.88558 0.96290 0.98601 1.22267 0.98764 1.35667 1.08877 0.93022 1.27553 0.94231 0.95465 1.06008 1.70900 1.38870 1.32204 1.14545 0.82901 0.75917 0.76062 0.71054 1.19491 1.19573 1.19949 1.23881 0.99917 1.00432 0.96750 1.24925 0.99046 1.05591 0.75889 1.87128 1.66622 1.40057 1.33517 1.24318 0.76103 0.80102 0.91142 1.90717 1.56002 1.65785 1.22380 0.90690 0.88510 0.86735 0.72374 0.85650 0.86166 0.96850 0.97237 0.93355 0.85436 0.83186 0.90001 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.57 71.98 0.62 -0.92 16 2 C 0.12 2.41 1.17 3.57 0.00 2.41 16 3 N -1.08 -25.28 5.52 -152.36 -0.84 -26.12 16 4 S 2.62 90.08 5.18 -56.49 -0.29 89.78 16 5 O -0.96 -32.42 12.82 -127.65 -1.64 -34.06 16 6 O -0.98 -40.00 18.08 -127.65 -2.31 -42.30 16 7 C -0.61 -25.96 4.32 71.98 0.31 -25.65 16 8 C 0.02 0.82 4.29 29.85 0.13 0.95 16 9 C -0.62 -36.84 9.11 25.60 0.23 -36.61 16 10 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 11 C -0.03 -2.04 5.46 84.65 0.46 -1.58 16 12 N -0.93 -58.59 13.65 21.45 0.29 -58.30 16 13 Si 1.12 51.70 29.90 68.60 2.05 53.75 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C -0.17 -2.74 5.76 31.64 0.18 -2.56 16 18 C 0.02 0.40 7.08 72.52 0.51 0.91 16 19 O -0.36 -10.32 10.37 -52.42 -0.54 -10.86 16 20 C 0.45 13.14 4.51 71.43 0.32 13.46 16 21 O -0.47 -17.06 17.04 21.61 0.37 -16.70 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.44 7.72 8.61 -96.75 -0.83 6.88 16 26 H 0.13 5.39 7.71 -2.39 -0.02 5.38 16 27 H 0.12 5.02 4.79 -2.39 -0.01 5.01 16 28 H 0.01 0.73 8.01 -2.38 -0.02 0.71 16 29 H 0.01 0.54 8.01 -2.38 -0.02 0.52 16 30 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 31 H 0.13 2.26 6.02 -2.39 -0.01 2.24 16 32 H 0.15 1.00 7.81 -2.39 -0.02 0.98 16 33 H 0.08 2.23 5.81 -2.39 -0.01 2.22 16 34 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -81.09 288.46 0.27 -80.82 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.40 Total: 13.57 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 2.77 Total: -49.58 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -0.55 Total: -84.42 kcal Atomic # 8 Polarization: -99.80 SS G_CDS: -4.12 Total: -103.92 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Atomic # 16 Polarization: 90.08 SS G_CDS: -0.29 Total: 89.78 kcal Total: -81.09 0.27 -80.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810103235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.733 kcal (2) G-P(sol) polarization free energy of solvation -81.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds