Wall clock time and date at job start Mon Mar 30 2020 01:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00088 * 2 1 4 4 N 1.46901 * 109.47169 * 124.12995 * 3 2 1 5 5 C 1.46901 * 110.99887 * 299.16765 * 4 3 2 6 6 C 1.50705 * 109.46985 * 288.12470 * 5 4 3 7 7 H 1.08000 * 120.00030 * 354.71624 * 6 5 4 8 8 C 1.37873 * 120.00050 * 174.71596 * 6 5 4 9 9 N 1.31514 * 120.00087 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00330 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46611 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47218 * 119.99890 * 10 8 6 13 13 H 1.48501 * 109.47284 * 240.00173 * 10 8 6 14 14 C 1.46903 * 111.00056 * 63.11734 * 4 3 2 15 15 C 1.53004 * 109.46940 * 66.04894 * 14 4 3 16 16 C 1.52995 * 109.47093 * 179.97438 * 15 14 4 17 17 H 1.09005 * 115.56279 * 330.69078 * 16 15 14 18 18 C 1.53004 * 117.49738 * 116.37861 * 16 15 14 19 19 C 1.52999 * 59.99976 * 107.49250 * 18 16 15 20 20 Cl 1.80305 * 117.49454 * 252.51417 * 19 18 16 21 21 Cl 1.80298 * 117.50361 * 107.48895 * 19 18 16 22 22 H 1.07999 * 119.99744 * 179.97438 * 1 2 3 23 23 H 1.07995 * 119.99765 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00261 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47153 * 4.13204 * 3 2 1 26 26 H 1.09005 * 109.47376 * 244.12502 * 3 2 1 27 27 H 1.09002 * 109.47475 * 48.12254 * 5 4 3 28 28 H 1.08997 * 109.47160 * 168.12592 * 5 4 3 29 29 H 0.96999 * 120.00533 * 180.02562 * 9 8 6 30 30 H 1.08993 * 109.47359 * 306.05065 * 14 4 3 31 31 H 1.09002 * 109.47080 * 186.04658 * 14 4 3 32 32 H 1.09007 * 109.46897 * 59.99664 * 15 14 4 33 33 H 1.09002 * 109.47042 * 299.99788 * 15 14 4 34 34 H 1.08999 * 117.49689 * 214.97769 * 18 16 15 35 35 H 1.08990 * 117.49671 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9813 1.3406 1.1465 5 6 2.2449 1.2408 2.4136 6 6 1.5053 2.5290 2.6677 7 1 1.6424 3.3702 2.0043 8 6 0.6538 2.6338 3.7469 9 7 0.4873 1.6097 4.5550 10 14 -0.2635 4.2304 4.0615 11 1 0.0946 5.2213 3.0150 12 1 -1.7261 3.9769 4.0227 13 1 0.1115 4.7620 5.3964 14 6 3.9953 0.2827 1.0421 15 6 4.9017 0.5618 -0.1585 16 6 5.9581 -0.5396 -0.2669 17 1 6.2484 -1.0071 0.6741 18 6 5.9324 -1.4227 -1.5161 19 6 7.0378 -0.3799 -1.3390 20 17 6.9679 1.0920 -2.3781 21 17 8.6931 -0.9792 -0.9493 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3575 2.1323 0.0740 26 1 2.6336 1.3955 -0.9247 27 1 1.5322 0.4180 2.3559 28 1 2.9460 1.0577 3.2278 29 1 -0.1120 1.6832 5.3141 30 1 3.5030 -0.6806 0.9095 31 1 4.5942 0.2625 1.9526 32 1 5.3940 1.5252 -0.0260 33 1 4.3027 0.5820 -1.0690 34 1 6.2058 -2.4711 -1.3970 35 1 5.1626 -1.2193 -2.2604 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823163039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:38 Heat of formation + Delta-G solvation = 15.123391 kcal Electronic energy + Delta-G solvation = -17175.884460 eV Core-core repulsion = 14261.365139 eV Total energy + Delta-G solvation = -2914.519322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70033 -38.57634 -36.97730 -36.52366 -34.81890 -33.83509 -31.37691 -28.66860 -26.76611 -24.39766 -23.20038 -22.37406 -21.57197 -20.15929 -18.33323 -17.33822 -16.99101 -16.63829 -16.26883 -15.69062 -15.29345 -14.76909 -14.60135 -14.13287 -13.97259 -13.55063 -13.22681 -13.05586 -12.87204 -12.66973 -12.49682 -12.25726 -12.24383 -12.17660 -12.07458 -12.04019 -11.85270 -11.80901 -11.24817 -11.04858 -10.63488 -10.56493 -10.13008 -8.88680 -8.14630 -6.23186 0.23127 1.23818 1.40878 1.42529 1.49209 1.55060 2.27198 2.43150 3.11592 3.18151 3.38268 3.53549 4.08217 4.10965 4.19967 4.29157 4.46754 4.56060 4.64103 4.69433 4.78090 4.95452 5.01566 5.11220 5.20775 5.27586 5.32604 5.44786 5.71217 5.77068 5.95445 6.16176 6.44154 6.72417 6.94002 7.46035 8.95499 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003795 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.051362 B = 7375.954606 C = 7595.145452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.090 3.910 4 N -0.539 5.539 5 C 0.207 3.793 6 C -0.514 4.514 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.057 3.943 15 C -0.076 4.076 16 C -0.112 4.112 17 H 0.133 0.867 18 C -0.123 4.123 19 C -0.008 4.008 20 Cl -0.105 7.105 21 Cl -0.107 7.107 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.057 0.943 26 H 0.092 0.908 27 H -0.017 1.017 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.837 -7.317 -14.120 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.205 4.205 3 C -0.038 4.038 4 N -0.262 5.262 5 C 0.081 3.919 6 C -0.553 4.553 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.071 4.071 15 C -0.113 4.113 16 C -0.131 4.131 17 H 0.151 0.849 18 C -0.160 4.160 19 C -0.059 4.059 20 Cl -0.078 7.078 21 Cl -0.080 7.080 22 H 0.122 0.878 23 H 0.104 0.896 24 H 0.131 0.869 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.001 0.999 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.150 -6.815 -14.021 19.166 hybrid contribution -0.780 0.041 0.689 1.042 sum 10.369 -6.774 -13.331 18.197 Atomic orbital electron populations 1.23852 0.96330 1.01595 1.00526 1.23595 0.96796 0.99913 1.00186 1.21263 0.94479 0.94144 0.93910 1.62267 1.15094 1.45959 1.02875 1.19378 0.91161 0.95424 0.85974 1.21470 1.24262 0.99123 1.10429 0.92465 1.25775 0.97803 0.99729 0.95919 1.70078 1.38718 1.32144 1.16470 0.85485 0.78151 0.79819 0.78088 1.18936 1.20557 1.20658 1.22053 0.93672 0.93057 0.98298 1.21137 0.94711 0.97077 0.98400 1.23254 0.94497 0.99789 0.95588 0.84896 1.24234 0.95570 0.97278 0.98930 1.26984 0.83057 0.92759 1.03086 1.98749 1.97882 1.41467 1.69664 1.98743 1.27524 1.87587 1.94133 0.87776 0.89648 0.86912 0.92410 0.89038 0.99876 0.98785 0.92935 0.94522 0.92350 0.91080 0.90251 0.84412 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.22 14.32 67.78 0.97 -5.24 16 2 C -0.19 -6.21 7.45 25.65 0.19 -6.02 16 3 C 0.09 3.22 5.46 85.56 0.47 3.68 16 4 N -0.54 -21.89 4.66 -905.33 -4.22 -26.11 16 5 C 0.21 10.65 4.59 85.56 0.39 11.04 16 6 C -0.51 -28.78 8.51 25.60 0.22 -28.56 16 7 H 0.06 3.19 7.67 -2.91 -0.02 3.17 16 8 C 0.01 0.31 5.46 84.65 0.46 0.77 16 9 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 10 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.06 1.82 4.74 86.30 0.41 2.23 16 15 C -0.08 -1.84 4.51 30.59 0.14 -1.70 16 16 C -0.11 -2.11 5.58 -10.79 -0.06 -2.17 16 17 H 0.13 2.42 8.08 -2.38 -0.02 2.40 16 18 C -0.12 -1.75 9.86 30.60 0.30 -1.45 16 19 C -0.01 -0.14 3.62 30.59 0.11 -0.03 16 20 Cl -0.10 -2.22 28.23 -2.72 -0.08 -2.30 16 21 Cl -0.11 -2.08 29.29 -2.72 -0.08 -2.16 16 22 H 0.10 3.04 8.06 -2.91 -0.02 3.02 16 23 H 0.09 3.04 7.84 -2.91 -0.02 3.01 16 24 H 0.11 3.38 6.76 -2.91 -0.02 3.36 16 25 H 0.06 2.36 7.02 -2.39 -0.02 2.34 16 26 H 0.09 2.72 6.33 -2.38 -0.02 2.70 16 27 H -0.02 -0.91 6.75 -2.39 -0.02 -0.93 16 28 H -0.01 -0.33 7.81 -2.39 -0.02 -0.35 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.04 1.11 6.29 -2.39 -0.02 1.10 16 31 H 0.06 1.96 7.86 -2.39 -0.02 1.94 16 32 H 0.07 1.95 8.02 -2.38 -0.02 1.93 16 33 H 0.08 1.80 6.22 -2.39 -0.01 1.79 16 34 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.13 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -62.17 319.62 2.61 -59.57 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.07 Total: 7.46 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.60 Total: -27.43 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.93 Total: -81.44 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -4.30 SS G_CDS: -0.16 Total: -4.46 kcal Total: -62.17 2.61 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823163039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.689 kcal (2) G-P(sol) polarization free energy of solvation -62.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds