Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47068 * 2 1 4 4 C 1.36953 * 119.99773 * 264.82523 * 3 2 1 5 5 H 1.08005 * 119.99372 * 146.37897 * 4 3 2 6 6 C 1.38982 * 120.00278 * 326.38061 * 4 3 2 7 7 N 1.31410 * 119.99838 * 156.36960 * 6 4 3 8 8 Si 1.86802 * 119.99868 * 336.37024 * 6 4 3 9 9 H 1.48494 * 109.47116 * 95.32200 * 8 6 4 10 10 H 1.48491 * 109.47177 * 215.32255 * 8 6 4 11 11 H 1.48504 * 109.47024 * 335.32425 * 8 6 4 12 12 C 1.34773 * 120.00031 * 84.83060 * 3 2 1 13 13 O 1.21657 * 120.00131 * 175.16517 * 12 3 2 14 14 C 1.47237 * 120.00213 * 355.15993 * 12 3 2 15 15 N 1.35745 * 126.22348 * 0.71518 * 14 12 3 16 16 C 1.30160 * 108.99625 * 179.88044 * 15 14 12 17 17 N 1.35871 * 109.04616 * 0.37851 * 16 15 14 18 18 H 0.97000 * 126.17450 * 179.72519 * 17 16 15 19 19 C 1.35936 * 107.64103 * 359.76763 * 17 16 15 20 20 C 1.50693 * 126.61872 * 179.97438 * 19 17 16 21 21 F 1.39905 * 109.46858 * 0.03311 * 20 19 17 22 22 F 1.39901 * 109.47444 * 120.03637 * 20 19 17 23 23 F 1.39900 * 109.47052 * 240.04200 * 20 19 17 24 24 H 1.08998 * 109.47189 * 65.88685 * 1 2 3 25 25 H 1.08997 * 109.47245 * 185.89057 * 1 2 3 26 26 H 1.09001 * 109.46849 * 305.88909 * 1 2 3 27 27 H 1.08996 * 109.46725 * 239.99759 * 2 1 3 28 28 H 1.09004 * 109.46790 * 119.99781 * 2 1 3 29 29 H 0.97004 * 119.99672 * 179.97438 * 7 6 4 30 30 H 1.07997 * 125.48069 * 180.11302 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3474 1.9911 -1.1812 5 1 2.1826 3.0513 -1.3058 6 6 2.8934 1.2460 -2.2196 7 7 2.7855 1.6688 -3.4592 8 14 3.7807 -0.3565 -1.8532 9 1 2.8382 -1.4925 -2.0154 10 1 4.9181 -0.5189 -2.7939 11 1 4.2912 -0.3320 -0.4588 12 6 2.1438 2.0516 1.1624 13 8 2.6315 3.1661 1.1723 14 6 1.6906 1.4353 2.4204 15 7 1.1438 0.2004 2.5572 16 6 0.8690 -0.0046 3.8129 17 7 1.2215 1.0949 4.5291 18 1 1.1217 1.2105 5.4870 19 6 1.7385 2.0039 3.6606 20 6 2.2629 3.3751 4.0010 21 9 2.1419 3.5920 5.3779 22 9 3.6092 3.4646 3.6313 23 9 1.5242 4.3416 3.3101 24 1 -0.3633 0.4198 -0.9380 25 1 -0.3633 -1.0222 0.1055 26 1 -0.3633 0.6024 0.8326 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.1669 1.1488 -4.1838 30 1 0.4275 -0.9024 4.2195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823543636.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -120.107875 kcal Electronic energy + Delta-G solvation = -22678.271659 eV Core-core repulsion = 18674.214871 eV Total energy + Delta-G solvation = -4004.056788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.21998 -48.78742 -48.65962 -43.34119 -40.27190 -37.10197 -34.58624 -33.74181 -31.93746 -31.27361 -28.02252 -26.49489 -24.51565 -23.59366 -22.96691 -21.15930 -20.03015 -19.57480 -19.23378 -18.81057 -17.99711 -17.58088 -16.75461 -16.54386 -16.00622 -15.63043 -15.54406 -15.43026 -15.10629 -15.02568 -14.84880 -14.81183 -14.76623 -14.41254 -14.22860 -13.67593 -13.59825 -13.02327 -12.67077 -12.53012 -12.02698 -11.72630 -11.29655 -11.11372 -11.04062 -10.53723 -10.10660 -9.73248 -8.56378 -6.10223 0.03355 1.16432 1.18821 1.29708 1.44342 1.49386 1.92245 2.16006 2.39166 2.57568 2.72888 2.98301 3.15152 3.27497 3.43759 4.00942 4.09772 4.23576 4.53412 4.60413 4.71536 4.92761 5.09699 5.21014 5.48220 5.53469 6.00093 6.17145 6.49549 6.65192 6.89040 7.25653 7.81554 8.60139 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.007290 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.440861 B = 3839.858147 C = 4399.899235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 N -0.448 5.448 4 C -0.332 4.332 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.897 5.897 8 Si 0.949 3.051 9 H -0.237 1.237 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.504 3.496 13 O -0.602 6.602 14 C 0.029 3.971 15 N -0.490 5.490 16 C 0.259 3.741 17 N -0.524 5.524 18 H 0.450 0.550 19 C -0.082 4.082 20 C 0.554 3.446 21 F -0.169 7.169 22 F -0.172 7.172 23 F -0.173 7.173 24 H 0.027 0.973 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.283 0.717 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -9.370 19.896 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.038 4.038 3 N -0.167 5.167 4 C -0.460 4.460 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.534 5.534 8 Si 0.773 3.227 9 H -0.161 1.161 10 H -0.210 1.210 11 H -0.192 1.192 12 C 0.293 3.707 13 O -0.486 6.486 14 C -0.104 4.104 15 N -0.210 5.210 16 C -0.026 4.026 17 N -0.130 5.130 18 H 0.294 0.706 19 C -0.203 4.203 20 C 0.498 3.502 21 F -0.151 7.151 22 F -0.153 7.153 23 F -0.154 7.154 24 H 0.046 0.954 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -5.461 -9.358 18.991 21.864 hybrid contribution 0.738 0.952 0.497 1.303 sum -4.723 -8.406 19.487 21.742 Atomic orbital electron populations 1.21791 0.93947 1.02830 1.00170 1.22285 0.96995 0.82280 1.02265 1.43774 1.55144 1.13463 1.04345 1.18726 1.43057 0.95062 0.89181 0.93090 1.26084 0.96008 1.02600 0.93864 1.69864 1.41762 1.42041 0.99728 0.85848 0.78833 0.79380 0.78685 1.16144 1.21020 1.19207 1.17576 0.83351 0.86805 0.82927 1.90681 1.49840 1.21647 1.86480 1.20479 1.04137 0.93673 0.92079 1.70965 1.17325 1.13498 1.19229 1.26832 0.97412 0.92680 0.85629 1.42899 1.46076 1.12154 1.11850 0.70617 1.20445 1.13544 0.93711 0.92610 1.16911 0.75735 0.83727 0.73830 1.93180 1.95789 1.95714 1.30371 1.93243 1.34132 1.96511 1.91449 1.93240 1.76920 1.65451 1.79801 0.95399 0.88955 0.92775 0.93082 0.86954 0.90704 0.69503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.49 71.98 0.68 -3.98 16 2 C 0.08 3.53 4.33 86.38 0.37 3.91 16 3 N -0.45 -23.71 2.25 -639.42 -1.44 -25.15 16 4 C -0.33 -20.49 9.40 84.07 0.79 -19.70 16 5 H 0.05 3.63 7.88 -2.91 -0.02 3.61 16 6 C 0.02 1.05 5.28 84.93 0.45 1.50 16 7 N -0.90 -54.20 13.96 21.67 0.30 -53.90 16 8 Si 0.95 43.92 24.96 68.60 1.71 45.63 16 9 H -0.24 -9.55 6.64 99.48 0.66 -8.89 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.50 26.04 7.58 86.61 0.66 26.70 16 13 O -0.60 -35.40 13.79 -4.21 -0.06 -35.45 16 14 C 0.03 1.10 6.32 40.50 0.26 1.36 16 15 N -0.49 -13.92 6.30 -188.82 -1.19 -15.11 16 16 C 0.26 3.87 13.03 180.10 2.35 6.21 16 17 N -0.52 -8.67 6.00 -185.46 -1.11 -9.78 16 18 H 0.45 3.35 8.79 -92.71 -0.81 2.54 16 19 C -0.08 -2.51 6.52 41.52 0.27 -2.24 16 20 C 0.55 18.57 2.81 71.23 0.20 18.77 16 21 F -0.17 -4.23 17.05 44.97 0.77 -3.46 16 22 F -0.17 -6.77 16.15 44.97 0.73 -6.05 16 23 F -0.17 -6.81 16.22 44.97 0.73 -6.08 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.05 1.94 6.71 -2.39 -0.02 1.92 16 27 H 0.05 2.24 3.10 -2.39 -0.01 2.23 16 28 H 0.11 4.25 5.64 -2.38 -0.01 4.24 16 29 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.29 0.16 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -83.37 267.05 6.83 -76.54 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 0.37 Total: 0.28 kcal Atomic # 6 Polarization: 26.51 SS G_CDS: 6.03 Total: 32.54 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.44 Total: -103.94 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.06 Total: -35.45 kcal Atomic # 9 Polarization: -17.81 SS G_CDS: 2.22 Total: -15.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.71 Total: 45.63 kcal Total: -83.37 6.83 -76.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543636.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.569 kcal (2) G-P(sol) polarization free energy of solvation -83.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds