Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21627 * 119.99487 * 0.02562 * 13 12 2 15 15 C 1.47317 * 120.00051 * 180.02562 * 13 12 2 16 16 N 1.35756 * 126.23730 * 359.69143 * 15 13 12 17 17 C 1.30175 * 108.86963 * 179.88186 * 16 15 13 18 18 N 1.35844 * 108.99999 * 0.38259 * 17 16 15 19 19 H 0.96999 * 126.13266 * 179.76837 * 18 17 16 20 20 C 1.35381 * 107.73205 * 359.76040 * 18 17 16 21 21 C 1.50699 * 126.56379 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47099 * 0.02562 * 21 20 18 23 23 F 1.39907 * 109.46802 * 120.00210 * 21 20 18 24 24 F 1.39894 * 109.47060 * 239.99829 * 21 20 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.08005 * 125.49642 * 180.12123 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1619 -2.4116 15 6 2.6378 -0.7129 -3.5601 16 7 3.0003 -2.0187 -3.6410 17 6 3.3778 -2.2760 -4.8599 18 7 3.2790 -1.1425 -5.6021 19 1 3.5003 -1.0534 -6.5423 20 6 2.8161 -0.1597 -4.7943 21 6 2.5485 1.2712 -5.1840 22 9 2.8529 1.4506 -6.5376 23 9 1.1989 1.5691 -4.9665 24 9 3.3445 2.1220 -4.4097 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 3.7190 -3.2348 -5.2216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824689149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -121.733106 kcal Electronic energy + Delta-G solvation = -21906.302817 eV Core-core repulsion = 17902.175554 eV Total energy + Delta-G solvation = -4004.127264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.16478 -47.77231 -47.51062 -42.54750 -38.76461 -35.01011 -33.35833 -32.24201 -31.12043 -29.74130 -26.15164 -25.13265 -23.43806 -22.23688 -20.75403 -19.95514 -19.34575 -18.49137 -18.30563 -17.29412 -16.51102 -15.81167 -15.64673 -15.43354 -14.76480 -14.51208 -14.42746 -14.10428 -14.04043 -13.87951 -13.70873 -13.69350 -13.04596 -12.86265 -12.63362 -12.14526 -11.78592 -11.25963 -10.77240 -10.70233 -10.56800 -10.13350 -9.77044 -9.37265 -9.21810 -9.16056 -8.70604 -8.11603 -6.15265 -4.17554 0.99865 2.04533 2.24332 2.76924 3.28395 3.40154 3.45265 3.58480 3.72826 3.75160 4.03941 4.34187 4.35035 4.37179 4.72802 5.17142 5.19472 5.36942 5.92284 6.37033 6.42923 6.60512 6.69013 6.89879 7.19413 7.28519 7.38450 7.54990 8.18932 8.56546 8.79108 8.91363 9.45091 10.96922 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.028118 B = 0.005355 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.578715 B = 5227.639641 C = 5851.555483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.675 5.675 13 C 0.575 3.425 14 O -0.540 6.540 15 C 0.041 3.959 16 N -0.456 5.456 17 C 0.225 3.775 18 N -0.544 5.544 19 H 0.430 0.570 20 C -0.070 4.070 21 C 0.555 3.445 22 F -0.188 7.188 23 F -0.153 7.153 24 F -0.152 7.152 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.405 0.595 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -1.579 -21.423 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.322 5.322 13 C 0.357 3.643 14 O -0.418 6.418 15 C -0.093 4.093 16 N -0.175 5.175 17 C -0.060 4.060 18 N -0.148 5.148 19 H 0.270 0.730 20 C -0.190 4.190 21 C 0.499 3.501 22 F -0.170 7.170 23 F -0.134 7.134 24 F -0.133 7.133 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.240 0.760 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.930 -1.265 -20.492 20.621 hybrid contribution -0.301 0.862 -1.015 1.365 sum 1.629 -0.403 -21.507 21.572 Atomic orbital electron populations 1.22453 0.99053 1.01022 0.99430 1.19201 0.90316 0.94778 0.82478 0.93035 1.21036 1.33224 1.14461 0.88405 0.90019 1.24818 0.95504 0.96697 0.95479 1.69871 1.44973 1.40111 0.98008 0.86889 0.80541 0.83667 0.77485 1.20299 1.22183 1.18528 1.46017 1.63007 1.14361 1.08839 1.16929 0.79121 0.86056 0.82147 1.90830 1.51779 1.14613 1.84627 1.21060 1.03928 0.90897 0.93390 1.70881 1.15344 1.13073 1.18245 1.25547 1.01765 0.91914 0.86801 1.42885 1.49696 1.08769 1.13418 0.73010 1.20723 1.13530 0.90878 0.93897 1.16818 0.75675 0.84005 0.73616 1.93162 1.93190 1.96211 1.34399 1.93291 1.32079 1.93790 1.94261 1.93297 1.73454 1.71827 1.74714 0.92688 0.94367 0.93349 0.92321 0.76020 0.75524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 2 C 0.24 5.80 2.15 -69.08 -0.15 5.66 16 3 H 0.05 1.38 6.63 -51.93 -0.34 1.03 16 4 C -0.53 -14.77 9.31 -34.44 -0.32 -15.09 16 5 H 0.08 2.39 7.98 -52.48 -0.42 1.97 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 8 Si 0.88 22.05 24.37 -169.99 -4.14 17.91 16 9 H -0.28 -6.65 6.87 56.52 0.39 -6.27 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.68 -14.54 5.07 -56.04 -0.28 -14.83 16 13 C 0.57 11.84 7.78 -12.57 -0.10 11.74 16 14 O -0.54 -12.37 13.58 5.25 0.07 -12.30 16 15 C 0.04 0.68 6.98 -83.09 -0.58 0.10 16 16 N -0.46 -6.37 11.01 -11.03 -0.12 -6.50 16 17 C 0.22 1.93 13.04 -89.91 -1.17 0.76 16 18 N -0.54 -4.60 5.97 -10.11 -0.06 -4.66 16 19 H 0.43 1.91 8.77 -40.82 -0.36 1.55 16 20 C -0.07 -0.95 6.50 -81.68 -0.53 -1.48 16 21 C 0.55 7.87 2.81 36.01 0.10 7.97 16 22 F -0.19 -2.11 17.03 2.25 0.04 -2.07 16 23 F -0.15 -2.46 16.18 2.25 0.04 -2.43 16 24 F -0.15 -2.49 16.17 2.25 0.04 -2.45 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.40 8.16 8.25 -40.82 -0.34 7.82 16 30 H 0.23 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -33.94 274.38 -4.11 -38.05 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.08 Total: 2.72 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.51 Total: 8.42 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.31 Total: -51.98 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.94 -4.11 -38.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824689149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.684 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds