Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21627 * 119.99487 * 0.02562 * 13 12 2 15 15 C 1.47317 * 120.00051 * 180.02562 * 13 12 2 16 16 N 1.35756 * 126.23730 * 359.69143 * 15 13 12 17 17 C 1.30175 * 108.86963 * 179.88186 * 16 15 13 18 18 N 1.35844 * 108.99999 * 0.38259 * 17 16 15 19 19 H 0.96999 * 126.13266 * 179.76837 * 18 17 16 20 20 C 1.35381 * 107.73205 * 359.76040 * 18 17 16 21 21 C 1.50699 * 126.56379 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47099 * 0.02562 * 21 20 18 23 23 F 1.39907 * 109.46802 * 120.00210 * 21 20 18 24 24 F 1.39894 * 109.47060 * 239.99829 * 21 20 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.08005 * 125.49642 * 180.12123 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1619 -2.4116 15 6 2.6378 -0.7129 -3.5601 16 7 3.0003 -2.0187 -3.6410 17 6 3.3778 -2.2760 -4.8599 18 7 3.2790 -1.1425 -5.6021 19 1 3.5003 -1.0534 -6.5423 20 6 2.8161 -0.1597 -4.7943 21 6 2.5485 1.2712 -5.1840 22 9 2.8529 1.4506 -6.5376 23 9 1.1989 1.5691 -4.9665 24 9 3.3445 2.1220 -4.4097 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 3.7190 -3.2348 -5.2216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824689149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -147.789571 kcal Electronic energy + Delta-G solvation = -21907.432710 eV Core-core repulsion = 17902.175554 eV Total energy + Delta-G solvation = -4005.257157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.27624 -48.84039 -48.71434 -43.48727 -40.39791 -36.87656 -34.59227 -34.04427 -32.30238 -31.44337 -27.35855 -27.14860 -24.79526 -23.15871 -22.32063 -21.30816 -20.68756 -19.63310 -19.49381 -18.83189 -17.95609 -17.53018 -16.87914 -16.70023 -16.24900 -15.67492 -15.56896 -15.46968 -15.25626 -15.15099 -14.90678 -14.89021 -14.84955 -14.70689 -14.11505 -13.73033 -13.64691 -13.21550 -12.77401 -12.13399 -11.70820 -11.61571 -11.50586 -11.28279 -11.10094 -10.85434 -10.26418 -9.86619 -8.36359 -6.42725 -0.10045 1.05508 1.28924 1.30610 1.37657 1.47872 1.83375 2.27724 2.28679 2.31777 2.61729 2.99407 3.03395 3.20277 3.29628 3.87564 4.02518 4.41869 4.46480 4.57097 4.69418 4.89946 4.99736 5.31298 5.41688 5.58775 6.02075 6.15446 6.45069 6.57978 6.81915 7.15903 7.32053 8.79075 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.028118 B = 0.005355 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.578715 B = 5227.639641 C = 5851.555483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.029 0.971 4 C -0.534 4.534 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.261 1.261 12 N -0.680 5.680 13 C 0.572 3.428 14 O -0.571 6.571 15 C 0.006 3.994 16 N -0.495 5.495 17 C 0.261 3.739 18 N -0.520 5.520 19 H 0.452 0.548 20 C -0.063 4.063 21 C 0.553 3.447 22 F -0.168 7.168 23 F -0.168 7.168 24 F -0.169 7.169 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.271 0.729 29 H 0.410 0.590 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -2.277 -23.915 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.137 3.863 3 H 0.047 0.953 4 C -0.573 4.573 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.185 1.185 12 N -0.328 5.328 13 C 0.357 3.643 14 O -0.451 6.451 15 C -0.127 4.127 16 N -0.215 5.215 17 C -0.024 4.024 18 N -0.124 5.124 19 H 0.297 0.703 20 C -0.186 4.186 21 C 0.497 3.503 22 F -0.149 7.149 23 F -0.149 7.149 24 F -0.150 7.150 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 1.841 -1.985 -23.046 23.204 hybrid contribution -0.155 0.982 -0.384 1.065 sum 1.686 -1.004 -23.429 23.511 Atomic orbital electron populations 1.22339 0.97457 1.01766 0.99684 1.18875 0.91480 0.93313 0.82657 0.95346 1.21212 1.32519 1.13612 0.89908 0.92765 1.25555 0.96810 0.99432 0.95167 1.69978 1.46625 1.41928 0.98653 0.85995 0.79793 0.80230 0.77356 1.18332 1.21784 1.18524 1.45845 1.63805 1.14515 1.08606 1.17432 0.78107 0.85841 0.82885 1.90793 1.52949 1.15989 1.85366 1.20412 1.07140 0.92515 0.92646 1.70819 1.17357 1.11876 1.21400 1.26700 0.97738 0.93129 0.84873 1.42864 1.47991 1.07391 1.14178 0.70287 1.20459 1.13252 0.91102 0.93777 1.16885 0.74879 0.84241 0.74245 1.93198 1.92943 1.96157 1.32620 1.93258 1.33198 1.93957 1.94464 1.93261 1.73827 1.72521 1.75418 0.91706 0.93365 0.93700 0.91979 0.75433 0.69610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.01 8.96 71.98 0.65 -6.36 16 2 C 0.24 12.06 2.15 44.24 0.10 12.16 16 3 H 0.03 1.56 6.63 -2.39 -0.02 1.55 16 4 C -0.53 -30.31 9.31 25.60 0.24 -30.08 16 5 H 0.05 3.30 7.98 -2.91 -0.02 3.27 16 6 C 0.03 1.74 5.45 84.65 0.46 2.20 16 7 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 8 Si 0.94 45.53 24.37 68.60 1.67 47.21 16 9 H -0.26 -11.68 6.87 99.48 0.68 -11.00 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.26 -12.56 6.53 99.48 0.65 -11.91 16 12 N -0.68 -29.82 5.07 -449.46 -2.28 -32.09 16 13 C 0.57 23.82 7.78 86.63 0.67 24.49 16 14 O -0.57 -26.62 13.58 -4.12 -0.06 -26.67 16 15 C 0.01 0.19 6.98 40.50 0.28 0.47 16 16 N -0.50 -12.74 11.01 -188.82 -2.08 -14.82 16 17 C 0.26 3.30 13.04 180.10 2.35 5.65 16 18 N -0.52 -6.69 5.97 -185.90 -1.11 -7.80 16 19 H 0.45 1.81 8.77 -92.71 -0.81 1.00 16 20 C -0.06 -1.58 6.50 41.59 0.27 -1.31 16 21 C 0.55 15.07 2.81 71.24 0.20 15.27 16 22 F -0.17 -3.38 17.03 44.97 0.77 -2.61 16 23 F -0.17 -5.33 16.18 44.97 0.73 -4.60 16 24 F -0.17 -5.52 16.17 44.97 0.73 -4.79 16 25 H 0.06 2.76 8.14 -2.39 -0.02 2.75 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 2.05 3.27 -2.38 -0.01 2.04 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.41 16.90 8.25 -92.71 -0.77 16.13 16 30 H 0.29 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -76.60 274.38 3.47 -73.13 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.42 Total: 7.22 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 5.21 Total: 22.50 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -5.17 Total: -111.38 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 9 Polarization: -14.22 SS G_CDS: 2.22 Total: -12.00 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.21 kcal Total: -76.60 3.47 -73.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824689149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.660 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds