Wall clock time and date at job start Mon Mar 30 2020 01:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 S 1.65592 * 120.00363 * 179.97438 * 11 9 7 13 13 O 1.42102 * 104.27928 * 181.07670 * 12 11 9 14 14 O 1.42100 * 104.28246 * 308.93365 * 12 11 9 15 15 C 1.81399 * 104.44845 * 65.00663 * 12 11 9 16 16 C 1.50701 * 109.47250 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00079 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00154 * 179.97438 * 16 15 12 19 19 N 1.31524 * 120.00214 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00223 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47263 * 59.99601 * 20 18 16 22 22 H 1.48502 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46830 * 299.99706 * 20 18 16 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 27 27 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 28 28 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 29 29 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 30 30 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 31 31 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 32 32 H 1.08998 * 109.46827 * 299.99958 * 15 12 11 33 33 H 1.09001 * 109.47630 * 59.99936 * 15 12 11 34 34 H 0.96993 * 119.99866 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 16 7.3794 3.3495 -2.8017 13 8 7.6935 4.6448 -3.2943 14 8 8.2139 2.7059 -1.8485 15 6 6.9921 2.2245 -4.1710 16 6 8.2403 1.9617 -4.9737 17 1 9.1731 2.4255 -4.6888 18 6 8.1913 1.1293 -6.0717 19 7 7.0554 0.5641 -6.4184 20 14 9.7386 0.8031 -7.0662 21 1 10.7674 0.1841 -6.1923 22 1 9.4215 -0.1178 -8.1872 23 1 10.2567 2.0841 -7.6100 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3725 3.2189 1.4051 30 1 5.0054 2.3649 1.3315 31 1 5.5136 4.4233 -1.9924 32 1 6.6115 1.2842 -3.7722 33 1 6.2372 2.6791 -4.8125 34 1 7.0210 -0.0212 -7.1910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835413082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:24 Heat of formation + Delta-G solvation = -135.720240 kcal Electronic energy + Delta-G solvation = -19547.544478 eV Core-core repulsion = 16187.818627 eV Total energy + Delta-G solvation = -3359.725851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20723 -38.31725 -36.27223 -35.27197 -35.16998 -34.10716 -33.36040 -31.00976 -29.06879 -25.06541 -23.52603 -23.10212 -22.30415 -20.70506 -19.19671 -18.07163 -17.36895 -16.63617 -16.41243 -15.74380 -15.69897 -15.34707 -14.90572 -14.53950 -14.34015 -14.16012 -13.04796 -12.90708 -12.61768 -12.55116 -12.37903 -12.17206 -11.95952 -11.48472 -11.43041 -11.31693 -11.21684 -11.15960 -10.89344 -10.79072 -10.65641 -10.50610 -10.07828 -9.84866 -9.37477 -9.16978 -8.70960 -6.33662 -4.45222 1.00880 2.21130 2.94604 3.24207 3.26115 3.30729 3.37221 3.65825 4.21629 4.37825 4.54510 4.56807 4.75715 4.86606 4.88792 4.97926 5.05284 5.15979 5.19417 5.25721 5.32855 5.51271 5.60321 5.68265 5.76890 5.88267 6.57227 6.74877 6.98379 6.99234 7.40491 7.70505 7.75003 8.55795 9.22204 10.78092 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.004656 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.693477 B = 6012.453438 C = 6980.650704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.054 3.946 5 H 0.129 0.871 6 C -0.153 4.153 7 C -0.198 4.198 8 H 0.137 0.863 9 C 0.565 3.435 10 O -0.489 6.489 11 N -1.055 6.055 12 S 2.553 3.447 13 O -0.968 6.968 14 O -0.953 6.953 15 C -0.404 4.404 16 C -0.536 4.536 17 H 0.070 0.930 18 C 0.078 3.922 19 N -0.877 5.877 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.426 0.574 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 1.866 11.876 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.275 6.275 4 C -0.005 4.005 5 H 0.147 0.853 6 C -0.191 4.191 7 C -0.221 4.221 8 H 0.155 0.845 9 C 0.351 3.649 10 O -0.361 6.361 11 N -0.814 5.814 12 S 2.656 3.344 13 O -0.959 6.959 14 O -0.943 6.943 15 C -0.540 4.540 16 C -0.576 4.576 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.513 5.513 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.260 0.740 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.426 1.522 12.054 16.678 hybrid contribution 0.100 -0.094 -0.967 0.977 sum -11.326 1.428 11.086 15.913 Atomic orbital electron populations 1.21754 0.93539 1.02441 1.03111 1.22605 0.95499 0.83108 1.00889 1.87794 1.18399 1.27329 1.93941 1.22656 0.82167 0.94463 1.01229 0.85324 1.23494 1.03317 1.01991 0.90298 1.22784 0.97000 1.05336 0.96964 0.84502 1.19449 0.85328 0.83305 0.76864 1.90901 1.63629 1.24179 1.57375 1.55420 1.43741 1.18660 1.63563 1.07141 0.72923 0.76702 0.77652 1.93522 1.81180 1.39477 1.81710 1.93526 1.63296 1.77333 1.60162 1.27599 1.07054 1.09921 1.09475 1.20252 0.92319 1.32066 1.12939 0.91150 1.24924 0.97132 0.94272 0.96574 1.69950 1.25498 1.29478 1.26381 0.86391 0.82232 0.78752 0.79346 1.19347 1.20653 1.19386 0.90883 0.91910 0.91723 0.92531 0.92864 0.86846 0.87070 0.73987 0.88384 0.89659 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.52 6.53 37.16 0.24 0.76 16 3 O -0.36 -4.14 10.60 -35.23 -0.37 -4.51 16 4 C 0.05 0.64 5.96 -26.73 -0.16 0.48 16 5 H 0.13 1.60 7.45 -51.93 -0.39 1.21 16 6 C -0.15 -1.57 10.18 -26.73 -0.27 -1.85 16 7 C -0.20 -2.42 6.14 -91.77 -0.56 -2.98 16 8 H 0.14 1.37 8.14 -51.92 -0.42 0.94 16 9 C 0.56 9.35 7.35 -10.99 -0.08 9.27 16 10 O -0.49 -10.04 14.36 -11.55 -0.17 -10.21 16 11 N -1.05 -17.04 5.60 31.22 0.17 -16.87 16 12 S 2.55 55.59 5.03 -107.50 -0.54 55.05 16 13 O -0.97 -22.22 18.08 -57.54 -1.04 -23.26 16 14 O -0.95 -23.72 17.04 -64.78 -1.10 -24.82 16 15 C -0.40 -10.11 5.64 36.01 0.20 -9.91 16 16 C -0.54 -15.11 9.13 -34.44 -0.31 -15.43 16 17 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 18 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 19 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 20 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.43 5.00 8.79 -34.47 -0.30 4.70 16 32 H 0.10 2.57 7.19 -51.92 -0.37 2.19 16 33 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -35.71 314.24 -7.66 -43.38 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.41 Total: 3.13 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.66 Total: -18.33 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.91 Total: -41.31 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -2.68 Total: -62.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.54 Total: 55.05 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.71 -7.66 -43.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.344 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds