Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 S 1.65592 * 120.00363 * 179.97438 * 11 9 7 13 13 O 1.42102 * 104.27928 * 181.07670 * 12 11 9 14 14 O 1.42100 * 104.28246 * 308.93365 * 12 11 9 15 15 C 1.81399 * 104.44845 * 65.00663 * 12 11 9 16 16 C 1.50701 * 109.47250 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00079 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00154 * 179.97438 * 16 15 12 19 19 N 1.31524 * 120.00214 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00223 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47263 * 59.99601 * 20 18 16 22 22 H 1.48502 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46830 * 299.99706 * 20 18 16 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 27 27 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 28 28 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 29 29 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 30 30 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 31 31 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 32 32 H 1.08998 * 109.46827 * 299.99958 * 15 12 11 33 33 H 1.09001 * 109.47630 * 59.99936 * 15 12 11 34 34 H 0.96993 * 119.99866 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 16 7.3794 3.3495 -2.8017 13 8 7.6935 4.6448 -3.2943 14 8 8.2139 2.7059 -1.8485 15 6 6.9921 2.2245 -4.1710 16 6 8.2403 1.9617 -4.9737 17 1 9.1731 2.4255 -4.6888 18 6 8.1913 1.1293 -6.0717 19 7 7.0554 0.5641 -6.4184 20 14 9.7386 0.8031 -7.0662 21 1 10.7674 0.1841 -6.1923 22 1 9.4215 -0.1178 -8.1872 23 1 10.2567 2.0841 -7.6100 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3725 3.2189 1.4051 30 1 5.0054 2.3649 1.3315 31 1 5.5136 4.4233 -1.9924 32 1 6.6115 1.2842 -3.7722 33 1 6.2372 2.6791 -4.8125 34 1 7.0210 -0.0212 -7.1910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835413082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = -163.827175 kcal Electronic energy + Delta-G solvation = -19548.763286 eV Core-core repulsion = 16187.818627 eV Total energy + Delta-G solvation = -3360.944659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50105 -39.29261 -38.12847 -37.08838 -36.18265 -35.61491 -35.43362 -31.70676 -31.13042 -26.30919 -25.56107 -23.79624 -23.17279 -21.97074 -20.83203 -19.36827 -19.05157 -18.41229 -17.64980 -17.51857 -16.60212 -16.49536 -16.45802 -16.24753 -16.00397 -15.36230 -14.52724 -14.17682 -13.90455 -13.72646 -13.65137 -13.51546 -13.39551 -13.23754 -13.13247 -13.06151 -12.73810 -12.56917 -12.18006 -12.09194 -11.90715 -11.89335 -11.71215 -11.38674 -11.09814 -10.80658 -10.24226 -8.44697 -6.64620 -0.78395 0.90253 1.36349 1.40897 1.48753 1.52287 2.27323 2.36212 2.65821 2.77556 2.89330 3.16438 3.39714 3.61319 3.85589 4.03264 4.04551 4.19561 4.32323 4.46357 4.52664 4.61748 4.71768 4.79056 4.88854 4.99062 5.04669 5.26323 5.28990 5.64403 5.71115 6.15540 6.40456 6.46114 7.07475 8.68147 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.004656 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.693477 B = 6012.453438 C = 6980.650704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.363 6.363 4 C 0.043 3.957 5 H 0.116 0.884 6 C -0.128 4.128 7 C -0.201 4.201 8 H 0.166 0.834 9 C 0.561 3.439 10 O -0.533 6.533 11 N -1.037 6.037 12 S 2.600 3.400 13 O -0.978 6.978 14 O -0.983 6.983 15 C -0.422 4.422 16 C -0.571 4.571 17 H 0.069 0.931 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.257 1.257 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.448 0.552 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 2.701 12.662 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.282 6.282 4 C -0.016 4.016 5 H 0.134 0.866 6 C -0.166 4.166 7 C -0.224 4.224 8 H 0.183 0.817 9 C 0.349 3.651 10 O -0.408 6.408 11 N -0.802 5.802 12 S 2.700 3.300 13 O -0.968 6.968 14 O -0.974 6.974 15 C -0.557 4.557 16 C -0.610 4.610 17 H 0.087 0.913 18 C -0.178 4.178 19 N -0.545 5.545 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.192 1.192 23 H -0.182 1.182 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.130 0.870 31 H 0.288 0.712 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.165 2.384 12.823 17.835 hybrid contribution 0.223 -0.358 -1.139 1.215 sum -11.942 2.025 11.683 16.829 Atomic orbital electron populations 1.21763 0.92017 1.03604 1.03053 1.22815 0.96757 0.82335 1.01088 1.87779 1.17888 1.28526 1.94011 1.22667 0.82542 0.94245 1.02136 0.86629 1.23632 1.03513 1.00702 0.88715 1.22837 0.94723 1.06682 0.98188 0.81677 1.20300 0.86372 0.82290 0.76096 1.90890 1.65012 1.25918 1.58930 1.54866 1.42487 1.20229 1.62605 1.05441 0.73244 0.75154 0.76186 1.93502 1.82111 1.39146 1.82063 1.93484 1.65317 1.78041 1.60521 1.27668 1.06104 1.10523 1.11384 1.20715 0.93432 1.32782 1.14055 0.91275 1.25899 1.00508 0.93809 0.97628 1.70037 1.27482 1.29937 1.27013 0.85449 0.78217 0.79282 0.78074 1.18867 1.19249 1.18168 0.89165 0.91360 0.92319 0.93409 0.91694 0.83932 0.87040 0.71196 0.90380 0.89619 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.36 -7.84 10.60 -148.98 -1.58 -9.42 16 4 C 0.04 0.98 5.96 30.59 0.18 1.16 16 5 H 0.12 2.89 7.45 -2.39 -0.02 2.87 16 6 C -0.13 -2.27 10.18 30.60 0.31 -1.96 16 7 C -0.20 -4.51 6.14 -11.54 -0.07 -4.58 16 8 H 0.17 2.75 8.14 -2.38 -0.02 2.73 16 9 C 0.56 18.20 7.35 87.66 0.64 18.85 16 10 O -0.53 -22.31 14.36 13.33 0.19 -22.12 16 11 N -1.04 -32.43 5.60 -173.54 -0.97 -33.40 16 12 S 2.60 113.32 5.03 -56.49 -0.28 113.04 16 13 O -0.98 -44.14 18.08 -127.65 -2.31 -46.45 16 14 O -0.98 -49.32 17.04 -120.72 -2.06 -51.38 16 15 C -0.42 -21.77 5.64 71.24 0.40 -21.36 16 16 C -0.57 -32.85 9.13 25.60 0.23 -32.62 16 17 H 0.07 3.86 7.71 -2.91 -0.02 3.83 16 18 C 0.03 1.41 5.46 84.65 0.46 1.88 16 19 N -0.91 -53.00 13.29 21.45 0.28 -52.71 16 20 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.45 9.56 8.79 -96.75 -0.85 8.71 16 32 H 0.08 4.29 7.19 -2.39 -0.02 4.27 16 33 H 0.09 4.28 8.14 -2.39 -0.02 4.26 16 34 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -77.47 314.24 -1.05 -78.53 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.27 Total: 17.22 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.38 Total: -38.60 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -0.69 Total: -86.12 kcal Atomic # 8 Polarization: -123.62 SS G_CDS: -5.75 Total: -129.37 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 113.32 SS G_CDS: -0.28 Total: 113.04 kcal Total: -77.47 -1.05 -78.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.301 kcal (2) G-P(sol) polarization free energy of solvation -77.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds