Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.42906 * 113.99995 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54292 * 4.41416 * 4 3 2 6 6 C 1.52999 * 117.50080 * 218.74794 * 4 3 2 7 7 C 1.52998 * 117.49944 * 150.08453 * 4 3 2 8 8 H 1.08998 * 117.49367 * 215.00368 * 7 4 3 9 9 C 1.50691 * 117.50150 * 0.02562 * 7 4 3 10 10 O 1.21282 * 120.00141 * 359.97438 * 9 7 4 11 11 N 1.34776 * 120.00185 * 180.02562 * 9 7 4 12 12 S 1.65601 * 120.00182 * 179.97438 * 11 9 7 13 13 O 1.42098 * 104.27832 * 181.06686 * 12 11 9 14 14 O 1.42100 * 104.27943 * 308.93227 * 12 11 9 15 15 C 1.81409 * 104.44899 * 64.99880 * 12 11 9 16 16 C 1.50700 * 109.47305 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99534 * 359.97438 * 16 15 12 18 18 C 1.37873 * 120.00156 * 179.97438 * 16 15 12 19 19 N 1.31506 * 120.00080 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99852 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47241 * 90.00085 * 20 18 16 22 22 H 1.48505 * 109.47396 * 209.99962 * 20 18 16 23 23 H 1.48498 * 109.47474 * 330.00207 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 29 29 H 1.08997 * 117.49727 * 359.97438 * 6 4 3 30 30 H 1.08996 * 117.49875 * 145.02033 * 6 4 3 31 31 H 0.96994 * 119.99985 * 359.97438 * 11 9 7 32 32 H 1.09004 * 109.46993 * 300.00059 * 15 12 11 33 33 H 1.09000 * 109.47260 * 59.99892 * 15 12 11 34 34 H 0.97009 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5197 -0.0747 6 6 4.0513 2.5711 0.8501 7 6 4.0426 2.6884 -0.6762 8 1 4.9911 2.5561 -1.1967 9 6 3.0967 3.6870 -1.2918 10 8 1.8995 3.5002 -1.2396 11 7 3.5812 4.7870 -1.9014 12 16 2.5417 5.8841 -2.5785 13 8 3.3932 6.8745 -3.1381 14 8 1.6911 5.0986 -3.4025 15 6 1.6176 6.5602 -1.1715 16 6 0.6268 7.5825 -1.6658 17 1 0.5601 7.8036 -2.7208 18 6 -0.1944 8.2354 -0.7712 19 7 -1.0586 9.1279 -1.2025 20 14 -0.0793 7.8524 1.0535 21 1 0.9142 8.7561 1.6874 22 1 -1.4073 8.0548 1.6866 23 1 0.3468 6.4417 1.2373 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.3728 3.2163 1.4082 30 1 5.0056 2.3619 1.3332 31 1 4.5386 4.9362 -1.9435 32 1 1.0859 5.7546 -0.6651 33 1 2.3104 7.0324 -0.4749 34 1 -1.6367 9.5870 -0.5731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835413087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -125.728422 kcal Electronic energy + Delta-G solvation = -20104.533605 eV Core-core repulsion = 16745.241032 eV Total energy + Delta-G solvation = -3359.292573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17513 -38.10981 -36.31440 -35.29117 -35.19685 -34.04472 -33.21637 -30.80911 -29.77236 -25.11334 -23.01069 -22.94829 -22.35774 -20.70600 -19.14831 -18.14798 -17.59974 -16.56582 -16.23063 -15.84403 -15.59779 -15.39016 -14.71719 -14.62419 -14.18865 -14.02341 -13.22888 -12.73387 -12.68838 -12.56423 -12.45201 -12.27180 -12.00808 -11.63094 -11.35654 -11.29474 -11.24802 -11.08300 -10.83031 -10.76146 -10.51526 -10.27965 -9.93045 -9.80307 -9.36786 -9.23503 -8.79733 -6.28429 -4.37304 0.93113 2.26768 3.11450 3.18328 3.27083 3.30323 3.33822 3.59031 4.23843 4.26643 4.48882 4.54852 4.67639 4.82157 4.92474 4.99415 5.09506 5.16887 5.22196 5.26542 5.28989 5.44417 5.64889 5.75436 5.87691 6.15687 6.22418 6.37903 6.95997 7.16272 7.21668 7.84041 8.02992 8.61978 9.26640 10.82515 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.006444 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.896300 B = 4343.880014 C = 5120.037682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.325 6.325 4 C 0.052 3.948 5 H 0.120 0.880 6 C -0.160 4.160 7 C -0.200 4.200 8 H 0.135 0.865 9 C 0.555 3.445 10 O -0.461 6.461 11 N -1.062 6.062 12 S 2.580 3.420 13 O -0.963 6.963 14 O -0.944 6.944 15 C -0.459 4.459 16 C -0.532 4.532 17 H 0.087 0.913 18 C 0.091 3.909 19 N -0.880 5.880 20 Si 0.881 3.119 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.260 1.260 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.425 0.575 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 -17.525 6.492 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.242 6.242 4 C -0.008 4.008 5 H 0.138 0.862 6 C -0.198 4.198 7 C -0.223 4.223 8 H 0.153 0.847 9 C 0.339 3.661 10 O -0.329 6.329 11 N -0.822 5.822 12 S 2.680 3.320 13 O -0.954 6.954 14 O -0.935 6.935 15 C -0.595 4.595 16 C -0.571 4.571 17 H 0.105 0.895 18 C -0.116 4.116 19 N -0.515 5.515 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.185 1.185 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.021 -17.241 5.624 21.221 hybrid contribution 0.719 -0.089 1.449 1.620 sum 11.740 -17.330 7.073 22.095 Atomic orbital electron populations 1.21730 0.93420 1.01907 1.03925 1.22557 0.96102 0.83682 0.99635 1.88201 1.16764 1.25799 1.93471 1.22572 0.83951 0.92912 1.01321 0.86223 1.23507 1.03329 1.02541 0.90375 1.22873 1.01529 1.00266 0.97680 0.84747 1.19431 0.89013 0.80853 0.76754 1.90968 1.14698 1.73781 1.53502 1.55501 1.23892 1.35314 1.67536 1.06221 0.74358 0.73311 0.78106 1.93536 1.66184 1.58986 1.76645 1.93548 1.66855 1.68185 1.64882 1.28104 1.09549 1.08467 1.13365 1.20033 1.19288 1.21216 0.96539 0.89538 1.24846 0.93782 0.93639 0.99350 1.69861 1.21301 1.24691 1.35687 0.86741 0.78232 0.79803 0.84584 1.19643 1.20506 1.18466 0.91201 0.91287 0.91772 0.93521 0.93342 0.87188 0.86757 0.74128 0.88423 0.90231 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.26 16 2 C 0.06 0.60 6.53 37.16 0.24 0.84 16 3 O -0.32 -4.62 8.48 -57.36 -0.49 -5.10 16 4 C 0.05 0.54 6.40 -26.73 -0.17 0.37 16 5 H 0.12 0.81 7.93 -51.93 -0.41 0.40 16 6 C -0.16 -1.48 10.19 -26.69 -0.27 -1.75 16 7 C -0.20 -2.17 6.19 -91.74 -0.57 -2.74 16 8 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.55 9.06 7.35 -10.99 -0.08 8.97 16 10 O -0.46 -9.64 13.03 -23.93 -0.31 -9.95 16 11 N -1.06 -16.62 5.60 31.22 0.17 -16.45 16 12 S 2.58 56.04 5.03 -107.50 -0.54 55.50 16 13 O -0.96 -22.10 18.08 -57.54 -1.04 -23.14 16 14 O -0.94 -23.89 17.04 -64.79 -1.10 -24.99 16 15 C -0.46 -11.03 4.71 36.01 0.17 -10.86 16 16 C -0.53 -15.47 9.68 -34.44 -0.33 -15.80 16 17 H 0.09 2.69 7.96 -52.49 -0.42 2.27 16 18 C 0.09 2.64 5.47 -17.82 -0.10 2.54 16 19 N -0.88 -26.76 13.96 55.43 0.77 -25.99 16 20 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.42 4.64 8.79 -34.47 -0.30 4.34 16 32 H 0.10 2.36 6.25 -51.92 -0.32 2.04 16 33 H 0.08 1.69 7.57 -51.92 -0.39 1.30 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -38.61 308.17 -7.69 -46.30 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.40 Total: 2.24 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.73 Total: -19.68 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.95 Total: -42.44 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -2.94 Total: -63.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.54 Total: 55.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.61 -7.69 -46.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.432 kcal (2) G-P(sol) polarization free energy of solvation -38.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds