Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.42906 * 113.99995 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54292 * 4.41416 * 4 3 2 6 6 C 1.52999 * 117.50080 * 218.74794 * 4 3 2 7 7 C 1.52998 * 117.49944 * 150.08453 * 4 3 2 8 8 H 1.08998 * 117.49367 * 215.00368 * 7 4 3 9 9 C 1.50691 * 117.50150 * 0.02562 * 7 4 3 10 10 O 1.21282 * 120.00141 * 359.97438 * 9 7 4 11 11 N 1.34776 * 120.00185 * 180.02562 * 9 7 4 12 12 S 1.65601 * 120.00182 * 179.97438 * 11 9 7 13 13 O 1.42098 * 104.27832 * 181.06686 * 12 11 9 14 14 O 1.42100 * 104.27943 * 308.93227 * 12 11 9 15 15 C 1.81409 * 104.44899 * 64.99880 * 12 11 9 16 16 C 1.50700 * 109.47305 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99534 * 359.97438 * 16 15 12 18 18 C 1.37873 * 120.00156 * 179.97438 * 16 15 12 19 19 N 1.31506 * 120.00080 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99852 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47241 * 90.00085 * 20 18 16 22 22 H 1.48505 * 109.47396 * 209.99962 * 20 18 16 23 23 H 1.48498 * 109.47474 * 330.00207 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 29 29 H 1.08997 * 117.49727 * 359.97438 * 6 4 3 30 30 H 1.08996 * 117.49875 * 145.02033 * 6 4 3 31 31 H 0.96994 * 119.99985 * 359.97438 * 11 9 7 32 32 H 1.09004 * 109.46993 * 300.00059 * 15 12 11 33 33 H 1.09000 * 109.47260 * 59.99892 * 15 12 11 34 34 H 0.97009 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5197 -0.0747 6 6 4.0513 2.5711 0.8501 7 6 4.0426 2.6884 -0.6762 8 1 4.9911 2.5561 -1.1967 9 6 3.0967 3.6870 -1.2918 10 8 1.8995 3.5002 -1.2396 11 7 3.5812 4.7870 -1.9014 12 16 2.5417 5.8841 -2.5785 13 8 3.3932 6.8745 -3.1381 14 8 1.6911 5.0986 -3.4025 15 6 1.6176 6.5602 -1.1715 16 6 0.6268 7.5825 -1.6658 17 1 0.5601 7.8036 -2.7208 18 6 -0.1944 8.2354 -0.7712 19 7 -1.0586 9.1279 -1.2025 20 14 -0.0793 7.8524 1.0535 21 1 0.9142 8.7561 1.6874 22 1 -1.4073 8.0548 1.6866 23 1 0.3468 6.4417 1.2373 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.3728 3.2163 1.4082 30 1 5.0056 2.3619 1.3332 31 1 4.5386 4.9362 -1.9435 32 1 1.0859 5.7546 -0.6651 33 1 2.3104 7.0324 -0.4749 34 1 -1.6367 9.5870 -0.5731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835413087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -157.441126 kcal Electronic energy + Delta-G solvation = -20105.908771 eV Core-core repulsion = 16745.241032 eV Total energy + Delta-G solvation = -3360.667739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35571 -39.07381 -38.15070 -37.10714 -36.11378 -35.49892 -35.35265 -31.86681 -31.63750 -26.23121 -25.10757 -23.74048 -23.05975 -21.86190 -20.75543 -19.63974 -19.13550 -18.39678 -17.62913 -17.31050 -16.47331 -16.44073 -16.36731 -16.07121 -15.93490 -15.17335 -14.77239 -14.38585 -14.16114 -13.77702 -13.66817 -13.48621 -13.30552 -13.26440 -13.15874 -13.00789 -12.68177 -12.36507 -12.09470 -12.00620 -11.92478 -11.84375 -11.45057 -11.29432 -11.14153 -10.97199 -10.04131 -8.50131 -6.66754 -0.83324 1.05600 1.26716 1.31968 1.43170 1.61913 2.23010 2.58340 2.69556 2.79462 2.83766 3.17349 3.42021 3.78127 3.88602 4.05191 4.19432 4.23051 4.35661 4.43055 4.44463 4.53135 4.53650 4.86360 4.91510 5.04713 5.05551 5.12886 5.29211 5.76157 5.80525 6.36130 6.43449 6.61493 7.01722 8.65103 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.006444 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.896300 B = 4343.880014 C = 5120.037682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 O -0.372 6.372 4 C 0.040 3.960 5 H 0.163 0.837 6 C -0.143 4.143 7 C -0.206 4.206 8 H 0.181 0.819 9 C 0.545 3.455 10 O -0.513 6.513 11 N -1.039 6.039 12 S 2.610 3.390 13 O -0.978 6.978 14 O -0.987 6.987 15 C -0.471 4.471 16 C -0.557 4.557 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.927 5.927 20 Si 0.949 3.051 21 H -0.245 1.245 22 H -0.273 1.273 23 H -0.248 1.248 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.448 0.552 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.249 -19.721 8.991 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 O -0.291 6.291 4 C -0.019 4.019 5 H 0.180 0.820 6 C -0.180 4.180 7 C -0.229 4.229 8 H 0.198 0.802 9 C 0.333 3.667 10 O -0.385 6.385 11 N -0.806 5.806 12 S 2.709 3.291 13 O -0.969 6.969 14 O -0.977 6.977 15 C -0.606 4.606 16 C -0.596 4.596 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.564 5.564 20 Si 0.769 3.231 21 H -0.169 1.169 22 H -0.198 1.198 23 H -0.172 1.172 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.288 0.712 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.050 -19.412 8.111 25.299 hybrid contribution -0.197 0.556 0.600 0.841 sum 13.853 -18.857 8.711 24.967 Atomic orbital electron populations 1.21781 0.94525 1.03095 1.01798 1.22719 0.95382 0.82817 1.01445 1.88149 1.19339 1.27822 1.93765 1.23127 0.82788 0.94619 1.01362 0.82011 1.23664 1.04642 1.00957 0.88776 1.23052 1.01913 0.98888 0.99013 0.80171 1.20590 0.89402 0.81025 0.75639 1.90958 1.17419 1.74707 1.55370 1.54907 1.24608 1.34089 1.67026 1.04961 0.74004 0.73138 0.77018 1.93505 1.66176 1.60294 1.76909 1.93494 1.68795 1.69226 1.66166 1.28134 1.09624 1.07449 1.15350 1.20290 1.21249 1.22948 0.95063 0.93789 1.25950 0.93040 0.93133 1.05204 1.69996 1.22449 1.26042 1.37956 0.85682 0.79258 0.80641 0.77524 1.16902 1.19789 1.17166 0.94244 0.88470 0.92900 0.90757 0.92208 0.89626 0.82202 0.71165 0.88520 0.86983 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 10.28 71.98 0.74 -2.55 16 2 C 0.05 1.00 6.53 71.98 0.47 1.47 16 3 O -0.37 -10.04 8.48 -127.82 -1.08 -11.12 16 4 C 0.04 0.68 6.40 30.59 0.20 0.88 16 5 H 0.16 1.29 7.93 -2.38 -0.02 1.27 16 6 C -0.14 -2.01 10.19 30.62 0.31 -1.70 16 7 C -0.21 -3.64 6.19 -11.52 -0.07 -3.71 16 8 H 0.18 1.47 8.14 -2.39 -0.02 1.45 16 9 C 0.55 16.88 7.35 87.65 0.64 17.52 16 10 O -0.51 -21.54 13.03 25.15 0.33 -21.21 16 11 N -1.04 -30.70 5.60 -173.54 -0.97 -31.67 16 12 S 2.61 114.23 5.03 -56.49 -0.28 113.95 16 13 O -0.98 -44.93 18.08 -127.65 -2.31 -47.24 16 14 O -0.99 -51.55 17.04 -120.72 -2.06 -53.61 16 15 C -0.47 -22.75 4.71 71.24 0.34 -22.42 16 16 C -0.56 -33.58 9.68 25.60 0.25 -33.33 16 17 H 0.04 2.92 7.96 -2.91 -0.02 2.90 16 18 C 0.03 1.72 5.47 84.66 0.46 2.18 16 19 N -0.93 -58.29 13.96 21.44 0.30 -57.99 16 20 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 21 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.45 8.45 8.79 -96.75 -0.85 7.60 16 32 H 0.10 4.70 6.25 -2.39 -0.01 4.69 16 33 H 0.11 4.60 7.57 -2.39 -0.02 4.58 16 34 H 0.28 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -89.95 308.17 -0.64 -90.59 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.21 Total: 14.50 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.34 Total: -41.65 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -0.67 Total: -89.66 kcal Atomic # 8 Polarization: -128.06 SS G_CDS: -5.12 Total: -133.18 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: 114.23 SS G_CDS: -0.28 Total: 113.95 kcal Total: -89.95 -0.64 -90.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.850 kcal (2) G-P(sol) polarization free energy of solvation -89.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds