Wall clock time and date at job start Mon Mar 30 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.08995 * 109.47050 * 305.59097 * 3 2 1 5 5 C 1.50701 * 109.46970 * 185.58567 * 3 2 1 6 6 H 1.08002 * 119.99834 * 266.31299 * 5 3 2 7 7 C 1.37870 * 119.99948 * 86.59260 * 5 3 2 8 8 N 1.31516 * 120.00275 * 185.33912 * 7 5 3 9 9 Si 1.86802 * 120.00174 * 5.33347 * 7 5 3 10 10 H 1.48509 * 109.46779 * 84.62947 * 9 7 5 11 11 H 1.48498 * 109.47361 * 204.62892 * 9 7 5 12 12 H 1.48501 * 109.47103 * 324.63393 * 9 7 5 13 13 O 1.45200 * 109.46729 * 65.58757 * 3 2 1 14 14 C 1.34229 * 116.99860 * 269.99695 * 13 3 2 15 15 O 1.20822 * 120.00133 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99750 * 179.97438 * 14 13 3 17 17 H 1.08999 * 108.58511 * 322.00403 * 16 14 13 18 18 C 1.53201 * 108.64456 * 80.00376 * 16 14 13 19 19 C 1.55557 * 106.24061 * 148.65625 * 18 16 14 20 20 S 1.83893 * 99.64239 * 323.01302 * 19 18 16 21 21 O 1.42104 * 111.46711 * 144.08971 * 20 19 18 22 22 O 1.42100 * 111.46621 * 283.93349 * 20 19 18 23 23 N 1.46450 * 108.64667 * 204.17059 * 16 14 13 24 24 H 1.08994 * 109.46978 * 300.00008 * 1 2 3 25 25 H 1.09005 * 109.46498 * 59.99562 * 1 2 3 26 26 H 1.08993 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47194 * 240.00587 * 2 1 3 28 28 H 1.08995 * 109.47047 * 120.00453 * 2 1 3 29 29 H 0.96999 * 120.00312 * 180.02562 * 8 7 5 30 30 H 1.09002 * 110.10384 * 267.85278 * 18 16 14 31 31 H 1.09000 * 110.09976 * 29.46618 * 18 16 14 32 32 H 1.09002 * 111.36611 * 80.61511 * 19 18 16 33 33 H 1.09003 * 111.37290 * 205.40803 * 19 18 16 34 34 H 0.96999 * 126.08539 * 57.15565 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 3.5407 1.4447 -0.1383 6 1 4.1642 1.4753 0.7431 7 6 4.1177 1.4135 -1.3901 8 7 5.4232 1.3093 -1.5101 9 14 3.0450 1.5188 -2.9158 10 1 2.7663 2.9438 -3.2275 11 1 3.7507 0.8905 -4.0614 12 1 1.7654 0.8061 -2.6715 13 8 1.6679 2.0874 1.2466 14 6 0.4850 2.7211 1.2754 15 8 -0.2165 2.7361 0.2918 16 6 0.0313 3.4129 2.5351 17 1 0.3312 2.8081 3.3909 18 6 0.7316 4.7724 2.6266 19 6 -0.2571 5.7225 3.3610 20 16 -1.8450 5.1181 2.6575 21 8 -2.8893 5.1586 3.6204 22 8 -2.0333 5.5795 1.3267 23 7 -1.4303 3.5034 2.5192 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.8291 1.2877 -2.3908 30 1 1.6559 4.6801 3.1970 31 1 0.9438 5.1525 1.6273 32 1 -0.2200 5.5768 4.4406 33 1 -0.0768 6.7646 3.0970 34 1 -2.0480 2.7596 2.4418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845528430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:45 Heat of formation + Delta-G solvation = -152.137494 kcal Electronic energy + Delta-G solvation = -20550.649069 eV Core-core repulsion = 17190.211313 eV Total energy + Delta-G solvation = -3360.437756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20775 -37.47752 -37.02946 -36.03330 -35.65496 -33.50461 -32.06954 -31.99450 -28.27561 -27.22942 -23.37819 -22.75721 -21.09595 -19.81630 -19.71560 -18.08423 -17.75039 -17.04847 -16.45041 -16.17628 -15.89551 -15.36737 -14.89857 -14.50725 -13.96432 -13.62871 -13.49526 -13.00342 -12.73022 -12.44326 -12.24236 -12.21803 -12.11160 -12.08777 -11.70099 -11.60243 -11.45147 -11.05961 -10.86349 -10.76741 -10.37373 -10.13489 -9.96939 -9.60377 -9.36717 -9.13177 -8.75117 -6.32580 -4.36395 0.03722 2.27339 2.65713 3.16490 3.25936 3.29592 3.31707 3.40207 3.65886 4.03016 4.21873 4.25605 4.69566 4.81576 4.96475 5.06519 5.21283 5.34306 5.50995 5.65848 5.82528 5.91114 5.97727 6.34672 6.55318 6.71220 6.73556 6.85885 7.08754 7.27092 7.44529 8.13976 8.49811 8.76428 9.26096 10.78631 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.005270 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.859307 B = 5312.196295 C = 5478.469757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.191 3.809 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.086 0.914 7 C 0.084 3.916 8 N -0.882 5.882 9 Si 0.864 3.136 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.258 1.258 13 O -0.343 6.343 14 C 0.435 3.565 15 O -0.496 6.496 16 C 0.122 3.878 17 H 0.118 0.882 18 C -0.116 4.116 19 C -0.588 4.588 20 S 2.570 3.430 21 O -0.960 6.960 22 O -0.941 6.941 23 N -1.079 6.079 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.270 0.730 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 5.936 10.578 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.138 3.862 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.104 0.896 7 C -0.120 4.120 8 N -0.518 5.518 9 Si 0.690 3.310 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.182 1.182 13 O -0.258 6.258 14 C 0.274 3.726 15 O -0.384 6.384 16 C 0.012 3.988 17 H 0.136 0.864 18 C -0.155 4.155 19 C -0.719 4.719 20 S 2.664 3.336 21 O -0.949 6.949 22 O -0.930 6.930 23 N -0.845 5.845 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -10.900 6.407 9.867 16.038 hybrid contribution -0.013 -0.546 -0.900 1.053 sum -10.913 5.861 8.967 15.292 Atomic orbital electron populations 1.21932 0.97520 0.99868 1.01490 1.22169 0.93586 0.98983 1.02481 1.21013 0.96276 0.88703 0.80207 0.93612 1.20754 0.87649 1.52647 0.94974 0.89569 1.24817 0.94933 0.93746 0.98537 1.69845 1.09481 1.47952 1.24544 0.87064 0.81403 0.79636 0.82920 1.19550 1.20703 1.18188 1.86597 1.33848 1.62161 1.43186 1.23597 0.81415 0.77845 0.89729 1.90661 1.54692 1.57474 1.35589 1.20774 0.81676 0.99054 0.97344 0.86412 1.22361 1.00035 0.89138 1.03957 1.30787 1.19877 1.09478 1.11738 1.06476 0.76415 0.74979 0.75759 1.93613 1.53076 1.85295 1.62957 1.93695 1.84403 1.79746 1.35151 1.54788 1.10370 1.27222 1.92073 0.93948 0.92722 0.94019 0.90994 0.91812 0.91943 0.85283 0.87778 0.83566 0.83625 0.72115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.57 37.16 0.32 -2.51 16 2 C -0.13 -2.85 5.30 -26.73 -0.14 -2.99 16 3 C 0.19 4.53 1.80 -27.88 -0.05 4.48 16 4 H 0.05 1.15 4.82 -51.93 -0.25 0.90 16 5 C -0.52 -14.16 9.24 -34.44 -0.32 -14.48 16 6 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 9 Si 0.86 20.86 26.27 -169.99 -4.47 16.40 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -6.03 6.29 56.52 0.36 -5.67 16 13 O -0.34 -7.08 9.81 -39.26 -0.39 -7.47 16 14 C 0.43 7.77 5.41 36.01 0.19 7.96 16 15 O -0.50 -10.34 13.70 -18.75 -0.26 -10.60 16 16 C 0.12 1.45 3.65 -69.00 -0.25 1.20 16 17 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.12 -1.09 6.06 -25.27 -0.15 -1.25 16 19 C -0.59 -4.02 7.65 38.52 0.29 -3.73 16 20 S 2.57 28.63 6.47 -107.50 -0.70 27.93 16 21 O -0.96 -12.79 18.14 -57.40 -1.04 -13.83 16 22 O -0.94 -14.80 18.15 -57.40 -1.04 -15.84 16 23 N -1.08 -12.29 6.17 -5.82 -0.04 -12.32 16 24 H 0.04 0.76 6.04 -51.93 -0.31 0.44 16 25 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.57 6.99 -51.93 -0.36 1.20 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.13 7.82 -51.93 -0.41 0.73 16 32 H 0.15 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.15 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.44 4.53 8.96 -40.36 -0.36 4.17 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -36.11 294.03 -7.16 -43.28 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.24 Total: 1.86 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.20 Total: -9.09 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.74 Total: -37.07 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -2.73 Total: -47.74 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.47 Total: 16.40 kcal Atomic # 16 Polarization: 28.63 SS G_CDS: -0.70 Total: 27.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.11 -7.16 -43.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845528430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.862 kcal (2) G-P(sol) polarization free energy of solvation -36.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds