Wall clock time and date at job start Mon Mar 30 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.08995 * 109.47050 * 305.59097 * 3 2 1 5 5 C 1.50701 * 109.46970 * 185.58567 * 3 2 1 6 6 H 1.08002 * 119.99834 * 266.31299 * 5 3 2 7 7 C 1.37870 * 119.99948 * 86.59260 * 5 3 2 8 8 N 1.31516 * 120.00275 * 185.33912 * 7 5 3 9 9 Si 1.86802 * 120.00174 * 5.33347 * 7 5 3 10 10 H 1.48509 * 109.46779 * 84.62947 * 9 7 5 11 11 H 1.48498 * 109.47361 * 204.62892 * 9 7 5 12 12 H 1.48501 * 109.47103 * 324.63393 * 9 7 5 13 13 O 1.45200 * 109.46729 * 65.58757 * 3 2 1 14 14 C 1.34229 * 116.99860 * 269.99695 * 13 3 2 15 15 O 1.20822 * 120.00133 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99750 * 179.97438 * 14 13 3 17 17 H 1.08999 * 108.58511 * 322.00403 * 16 14 13 18 18 C 1.53201 * 108.64456 * 80.00376 * 16 14 13 19 19 C 1.55557 * 106.24061 * 148.65625 * 18 16 14 20 20 S 1.83893 * 99.64239 * 323.01302 * 19 18 16 21 21 O 1.42104 * 111.46711 * 144.08971 * 20 19 18 22 22 O 1.42100 * 111.46621 * 283.93349 * 20 19 18 23 23 N 1.46450 * 108.64667 * 204.17059 * 16 14 13 24 24 H 1.08994 * 109.46978 * 300.00008 * 1 2 3 25 25 H 1.09005 * 109.46498 * 59.99562 * 1 2 3 26 26 H 1.08993 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47194 * 240.00587 * 2 1 3 28 28 H 1.08995 * 109.47047 * 120.00453 * 2 1 3 29 29 H 0.96999 * 120.00312 * 180.02562 * 8 7 5 30 30 H 1.09002 * 110.10384 * 267.85278 * 18 16 14 31 31 H 1.09000 * 110.09976 * 29.46618 * 18 16 14 32 32 H 1.09002 * 111.36611 * 80.61511 * 19 18 16 33 33 H 1.09003 * 111.37290 * 205.40803 * 19 18 16 34 34 H 0.96999 * 126.08539 * 57.15565 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 3.5407 1.4447 -0.1383 6 1 4.1642 1.4753 0.7431 7 6 4.1177 1.4135 -1.3901 8 7 5.4232 1.3093 -1.5101 9 14 3.0450 1.5188 -2.9158 10 1 2.7663 2.9438 -3.2275 11 1 3.7507 0.8905 -4.0614 12 1 1.7654 0.8061 -2.6715 13 8 1.6679 2.0874 1.2466 14 6 0.4850 2.7211 1.2754 15 8 -0.2165 2.7361 0.2918 16 6 0.0313 3.4129 2.5351 17 1 0.3312 2.8081 3.3909 18 6 0.7316 4.7724 2.6266 19 6 -0.2571 5.7225 3.3610 20 16 -1.8450 5.1181 2.6575 21 8 -2.8893 5.1586 3.6204 22 8 -2.0333 5.5795 1.3267 23 7 -1.4303 3.5034 2.5192 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.8291 1.2877 -2.3908 30 1 1.6559 4.6801 3.1970 31 1 0.9438 5.1525 1.6273 32 1 -0.2200 5.5768 4.4406 33 1 -0.0768 6.7646 3.0970 34 1 -2.0480 2.7596 2.4418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845528430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:45 Heat of formation + Delta-G solvation = -181.928702 kcal Electronic energy + Delta-G solvation = -20551.940913 eV Core-core repulsion = 17190.211313 eV Total energy + Delta-G solvation = -3361.729600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66117 -38.61338 -38.08449 -37.15515 -36.92430 -35.36119 -33.91316 -32.82096 -29.95145 -28.41637 -24.98265 -23.94768 -22.47115 -21.34078 -20.67455 -19.54490 -18.84552 -18.62046 -17.77855 -17.52014 -17.06845 -16.59918 -16.35996 -15.83103 -15.18218 -14.87439 -14.68048 -14.30241 -14.07425 -14.01138 -13.71643 -13.39598 -13.27265 -13.12531 -13.10622 -13.05291 -12.91319 -12.60380 -12.41205 -11.96110 -11.87867 -11.60907 -11.48355 -11.37695 -11.05033 -10.79684 -10.53093 -8.45416 -6.52738 -0.77800 1.19763 1.23891 1.29637 1.38122 1.45919 1.97654 2.19793 2.58442 2.82412 2.90100 3.25204 3.51108 3.71450 3.99718 4.17761 4.18307 4.24847 4.32292 4.41729 4.58509 4.63700 4.79212 4.94238 4.99569 5.06199 5.10202 5.35025 5.46674 5.67623 5.99286 6.18641 6.55175 6.91290 7.14440 8.69601 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.005270 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.859307 B = 5312.196295 C = 5478.469757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.193 3.807 4 H 0.030 0.970 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.040 3.960 8 N -0.923 5.923 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.271 1.271 12 H -0.248 1.248 13 O -0.349 6.349 14 C 0.428 3.572 15 O -0.530 6.530 16 C 0.128 3.872 17 H 0.158 0.842 18 C -0.124 4.124 19 C -0.539 4.539 20 S 2.559 3.441 21 O -0.986 6.986 22 O -1.000 7.000 23 N -1.079 6.079 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.274 0.726 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 6.408 12.293 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.139 3.861 4 H 0.047 0.953 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.161 4.161 8 N -0.561 5.561 9 Si 0.739 3.261 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.172 1.172 13 O -0.264 6.264 14 C 0.269 3.731 15 O -0.420 6.420 16 C 0.017 3.983 17 H 0.175 0.825 18 C -0.163 4.163 19 C -0.673 4.673 20 S 2.658 3.342 21 O -0.976 6.976 22 O -0.989 6.989 23 N -0.844 5.844 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.180 0.820 31 H 0.103 0.897 32 H 0.207 0.793 33 H 0.194 0.806 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -11.548 6.865 11.580 17.737 hybrid contribution 0.214 -0.653 -1.311 1.480 sum -11.334 6.213 10.270 16.508 Atomic orbital electron populations 1.21829 0.95390 1.01638 1.01004 1.22079 0.95421 0.97119 1.02464 1.20736 0.94057 0.90223 0.81115 0.95251 1.20918 0.89489 1.52165 0.93973 0.92694 1.25466 0.95864 0.93555 1.01203 1.69942 1.11025 1.49666 1.25454 0.86234 0.80331 0.79516 0.79986 1.19806 1.19546 1.17217 1.86555 1.35806 1.62759 1.41271 1.24909 0.79829 0.76798 0.91518 1.90652 1.55269 1.58540 1.37494 1.21152 0.81719 1.00555 0.94852 0.82479 1.22555 1.01636 0.88027 1.04122 1.30646 1.12971 1.10254 1.13458 1.06611 0.78185 0.74705 0.74692 1.93576 1.55789 1.85493 1.62781 1.93627 1.86269 1.80470 1.38511 1.54830 1.10333 1.27504 1.91748 0.93344 0.94313 0.91067 0.91871 0.91025 0.91603 0.81974 0.89654 0.79320 0.80593 0.71909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.57 71.98 0.62 -4.45 16 2 C -0.13 -5.52 5.30 30.60 0.16 -5.36 16 3 C 0.19 9.11 1.80 29.85 0.05 9.17 16 4 H 0.03 1.49 4.82 -2.39 -0.01 1.48 16 5 C -0.53 -29.08 9.24 25.60 0.24 -28.84 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C 0.04 2.24 5.47 84.65 0.46 2.70 16 8 N -0.92 -54.36 13.96 21.44 0.30 -54.06 16 9 Si 0.92 43.28 26.27 68.60 1.80 45.08 16 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.25 -11.26 6.29 99.48 0.63 -10.64 16 13 O -0.35 -14.10 9.81 -51.41 -0.50 -14.60 16 14 C 0.43 14.75 5.41 71.24 0.39 15.13 16 15 O -0.53 -21.96 13.70 21.98 0.30 -21.66 16 16 C 0.13 2.66 3.65 44.32 0.16 2.82 16 17 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.12 -1.86 6.06 31.54 0.19 -1.67 16 19 C -0.54 -4.72 7.65 72.86 0.56 -4.16 16 20 S 2.56 52.92 6.47 -56.49 -0.37 52.56 16 21 O -0.99 -24.99 18.14 -127.79 -2.32 -27.31 16 22 O -1.00 -31.67 18.15 -127.79 -2.32 -33.99 16 23 N -1.08 -22.64 6.17 -172.32 -1.06 -23.70 16 24 H 0.05 1.65 6.04 -2.39 -0.01 1.63 16 25 H 0.04 1.50 7.83 -2.38 -0.02 1.48 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.70 6.99 -2.39 -0.02 2.69 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.67 7.82 -2.39 -0.02 1.65 16 32 H 0.19 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.18 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.44 8.62 8.96 -93.00 -0.83 7.79 16 Total: -1.00 -81.90 294.03 -1.12 -83.02 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.22 Total: 9.33 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 2.83 Total: -14.66 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -0.76 Total: -77.76 kcal Atomic # 8 Polarization: -92.73 SS G_CDS: -4.84 Total: -97.57 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.80 Total: 45.08 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.37 Total: 52.56 kcal Total: -81.90 -1.12 -83.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845528430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.908 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds