Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47225 * 2 1 4 4 H 1.08997 * 109.47097 * 54.25941 * 3 2 1 5 5 C 1.50697 * 109.47100 * 174.26541 * 3 2 1 6 6 H 1.07993 * 120.00575 * 88.64761 * 5 3 2 7 7 C 1.37885 * 119.99401 * 268.64867 * 5 3 2 8 8 N 1.31509 * 120.00081 * 5.90474 * 7 5 3 9 9 Si 1.86803 * 119.99472 * 185.90448 * 7 5 3 10 10 H 1.48498 * 109.47060 * 265.12796 * 9 7 5 11 11 H 1.48507 * 109.46703 * 145.12946 * 9 7 5 12 12 H 1.48501 * 109.47311 * 25.12991 * 9 7 5 13 13 O 1.45210 * 109.46851 * 294.25988 * 3 2 1 14 14 C 1.34233 * 116.99410 * 90.00119 * 13 3 2 15 15 O 1.20818 * 120.00417 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99348 * 179.97438 * 14 13 3 17 17 H 1.08996 * 108.58610 * 322.00471 * 16 14 13 18 18 C 1.53207 * 108.64586 * 80.00115 * 16 14 13 19 19 C 1.55564 * 106.23831 * 148.65770 * 18 16 14 20 20 S 1.83904 * 99.64125 * 323.01025 * 19 18 16 21 21 O 1.42105 * 111.46407 * 144.08559 * 20 19 18 22 22 O 1.42091 * 111.46720 * 283.93783 * 20 19 18 23 23 N 1.46451 * 108.64677 * 204.16952 * 16 14 13 24 24 H 1.08995 * 109.47091 * 300.00326 * 1 2 3 25 25 H 1.09001 * 109.46926 * 60.00162 * 1 2 3 26 26 H 1.08993 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46817 * 240.00130 * 2 1 3 28 28 H 1.09001 * 109.46926 * 119.99838 * 2 1 3 29 29 H 0.97001 * 119.99715 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.09887 * 267.84754 * 18 16 14 31 31 H 1.08990 * 110.10005 * 29.46533 * 18 16 14 32 32 H 1.09003 * 111.36586 * 80.61456 * 19 18 16 33 33 H 1.08995 * 111.36785 * 205.40952 * 19 18 16 34 34 H 0.97001 * 126.07735 * 57.15133 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9852 0.8341 5 6 3.5403 1.4449 0.1420 6 1 4.1660 1.3925 -0.7367 7 6 4.1141 1.5139 1.3939 8 7 3.3572 1.4605 2.4680 9 14 5.9667 1.6831 1.5640 10 1 6.5718 0.3394 1.7466 11 1 6.2800 2.5315 2.7419 12 1 6.5208 2.3132 0.3387 13 8 1.6710 2.0863 -1.2482 14 6 0.4881 2.7200 -1.2804 15 8 -0.2158 2.7358 -0.2986 16 6 0.0382 3.4117 -2.5414 17 1 0.9045 3.8793 -3.0093 18 6 -0.5289 2.3606 -3.5010 19 6 -1.6390 3.0759 -4.3232 20 16 -2.3407 4.1608 -3.0145 21 8 -2.7421 5.4181 -3.5413 22 8 -3.1611 3.4273 -2.1157 23 7 -0.9197 4.4603 -2.1841 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7609 1.5094 3.3486 30 1 0.2553 1.9986 -4.1660 31 1 -0.9558 1.5308 -2.9379 32 1 -1.2142 3.6612 -5.1388 33 1 -2.3804 2.3666 -4.6908 34 1 -0.7589 5.1971 -1.5740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845528432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = -185.803025 kcal Electronic energy + Delta-G solvation = -20502.599422 eV Core-core repulsion = 17140.701819 eV Total energy + Delta-G solvation = -3361.897603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52728 -38.50895 -38.04536 -37.09606 -36.88847 -35.31857 -33.61482 -32.80493 -29.56485 -28.26203 -25.24301 -23.96551 -22.34995 -21.25323 -20.64531 -19.20242 -18.81317 -18.55872 -17.54274 -17.32988 -17.09968 -16.66293 -16.29171 -15.78584 -15.08729 -14.78812 -14.49780 -14.39432 -14.13251 -13.54872 -13.44479 -13.31285 -13.22434 -13.09308 -13.05311 -12.96809 -12.75615 -12.48466 -12.40313 -12.13441 -11.81858 -11.57456 -11.46032 -11.19572 -11.02093 -10.55278 -10.43615 -8.31493 -6.46944 -0.76139 1.27265 1.41257 1.43349 1.52963 1.56044 2.05135 2.39648 2.60361 2.85542 3.04266 3.27808 3.53287 3.80188 4.02358 4.25190 4.34107 4.38476 4.41020 4.55110 4.64548 4.80546 4.87227 4.96525 5.09614 5.21587 5.33404 5.53701 5.55882 5.88739 5.96585 6.16843 6.67508 7.03604 7.27188 8.77642 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.004757 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.822141 B = 5884.170238 C = 6092.510143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C 0.208 3.792 4 H 0.023 0.977 5 C -0.540 4.540 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.259 1.259 13 O -0.358 6.358 14 C 0.426 3.574 15 O -0.535 6.535 16 C 0.125 3.875 17 H 0.152 0.848 18 C -0.120 4.120 19 C -0.535 4.535 20 S 2.555 3.445 21 O -0.989 6.989 22 O -0.999 6.999 23 N -1.083 6.083 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 1.631 -16.976 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C 0.154 3.846 4 H 0.041 0.959 5 C -0.578 4.578 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.800 3.200 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.183 1.183 13 O -0.274 6.274 14 C 0.267 3.733 15 O -0.425 6.425 16 C 0.015 3.985 17 H 0.169 0.831 18 C -0.159 4.159 19 C -0.670 4.670 20 S 2.655 3.345 21 O -0.979 6.979 22 O -0.989 6.989 23 N -0.848 5.848 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.198 0.802 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -6.900 1.931 -16.266 17.774 hybrid contribution 1.233 0.193 1.411 1.884 sum -5.667 2.124 -14.855 16.040 Atomic orbital electron populations 1.21782 0.96169 1.00948 1.00438 1.21794 0.94576 0.97717 1.01210 1.20538 0.94816 0.89643 0.79557 0.95866 1.21299 0.90577 1.52434 0.93461 0.90984 1.25959 1.04193 0.93495 0.94925 1.70117 1.37950 1.49019 0.98693 0.85257 0.77949 0.78606 0.78145 1.19332 1.20867 1.18273 1.86520 1.35408 1.62920 1.42549 1.24867 0.80045 0.76829 0.91547 1.90663 1.55308 1.58305 1.38182 1.21195 0.97398 0.89709 0.90235 0.83062 1.22577 1.01055 0.95853 0.96435 1.30631 1.09335 1.14200 1.12831 1.06735 0.73385 0.76084 0.78337 1.93569 1.81654 1.42350 1.80371 1.93623 1.67506 1.74594 1.63128 1.54877 1.31243 1.35584 1.63058 0.95411 0.93495 0.91489 0.91431 0.93035 0.92190 0.81497 0.89288 0.79335 0.80199 0.72284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 8.58 71.98 0.62 -4.99 16 2 C -0.11 -5.29 5.63 30.60 0.17 -5.12 16 3 C 0.21 10.76 2.26 29.85 0.07 10.82 16 4 H 0.02 1.42 6.52 -2.39 -0.02 1.40 16 5 C -0.54 -29.27 8.69 25.60 0.22 -29.05 16 6 H 0.07 3.74 7.82 -2.91 -0.02 3.72 16 7 C 0.01 0.80 5.45 84.66 0.46 1.26 16 8 N -0.92 -53.66 12.91 21.45 0.28 -53.38 16 9 Si 0.98 41.93 29.54 68.60 2.03 43.95 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 13 O -0.36 -15.47 9.82 -51.44 -0.50 -15.97 16 14 C 0.43 16.16 5.41 71.24 0.39 16.54 16 15 O -0.53 -24.95 13.71 21.99 0.30 -24.65 16 16 C 0.13 2.89 3.65 44.32 0.16 3.05 16 17 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 18 C -0.12 -1.72 6.06 31.55 0.19 -1.53 16 19 C -0.53 -4.57 7.66 72.87 0.56 -4.01 16 20 S 2.56 56.60 6.47 -56.49 -0.37 56.23 16 21 O -0.99 -26.79 18.14 -127.79 -2.32 -29.10 16 22 O -1.00 -32.91 18.15 -127.79 -2.32 -35.23 16 23 N -1.08 -26.21 6.17 -172.32 -1.06 -27.27 16 24 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 25 H 0.05 1.80 5.90 -2.39 -0.01 1.79 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.59 7.68 -2.39 -0.02 1.57 16 32 H 0.19 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.18 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.44 10.59 8.96 -93.00 -0.83 9.75 16 Total: -1.00 -83.63 299.62 -0.84 -84.47 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.29 Total: 13.98 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 2.84 Total: -13.03 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -0.79 Total: -80.65 kcal Atomic # 8 Polarization: -100.12 SS G_CDS: -4.84 Total: -104.96 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 56.60 SS G_CDS: -0.37 Total: 56.23 kcal Total: -83.63 -0.84 -84.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845528432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.336 kcal (2) G-P(sol) polarization free energy of solvation -83.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds