Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47472 * 2 1 4 4 H 1.08999 * 109.46722 * 305.00427 * 3 2 1 5 5 C 1.50695 * 109.47249 * 185.00073 * 3 2 1 6 6 H 1.08000 * 119.99696 * 239.99645 * 5 3 2 7 7 C 1.37880 * 120.00180 * 60.00020 * 5 3 2 8 8 N 1.31510 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99954 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46784 * 89.99978 * 9 7 5 11 11 H 1.48496 * 109.47115 * 209.99871 * 9 7 5 12 12 H 1.48502 * 109.46948 * 330.00264 * 9 7 5 13 13 O 1.45200 * 109.46760 * 65.00021 * 3 2 1 14 14 C 1.34235 * 116.99805 * 270.00253 * 13 3 2 15 15 O 1.20824 * 120.00175 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99820 * 180.02562 * 14 13 3 17 17 H 1.09002 * 108.58377 * 40.69654 * 16 14 13 18 18 C 1.53195 * 108.64252 * 282.70145 * 16 14 13 19 19 C 1.55567 * 106.23792 * 211.51821 * 18 16 14 20 20 S 1.83901 * 99.64104 * 36.98898 * 19 18 16 21 21 O 1.42103 * 111.46651 * 75.85774 * 20 19 18 22 22 O 1.42099 * 111.46319 * 215.70792 * 20 19 18 23 23 N 1.46449 * 108.50536 * 158.61992 * 16 14 13 24 24 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47332 * 299.99948 * 1 2 3 26 26 H 1.09003 * 109.46942 * 59.99954 * 1 2 3 27 27 H 1.09001 * 109.47332 * 240.00052 * 2 1 3 28 28 H 1.09003 * 109.46942 * 120.00046 * 2 1 3 29 29 H 0.97001 * 119.99824 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.10268 * 330.70571 * 18 16 14 31 31 H 1.08998 * 110.10386 * 92.32864 * 18 16 14 32 32 H 1.09004 * 111.36840 * 154.59343 * 19 18 16 33 33 H 1.08994 * 111.36940 * 279.38131 * 19 18 16 34 34 H 0.96998 * 126.08496 * 302.69982 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5548 -0.3503 -0.7602 11 1 6.3830 0.9222 -2.8172 12 1 6.5569 2.0737 -0.6901 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5084 17 1 0.8590 3.9324 2.9589 18 6 -0.5088 2.3682 3.4927 19 6 -1.6418 3.0533 4.3095 20 16 -2.3970 4.0822 2.9854 21 8 -3.1889 3.2970 2.1047 22 8 -2.8506 5.3300 3.4917 23 7 -0.9955 4.4234 2.1381 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8293 -0.0619 -2.9495 30 1 -0.9051 1.5104 2.9492 31 1 0.2943 2.0521 4.1585 32 1 -2.3506 2.3214 4.6967 33 1 -1.2360 3.6716 5.1101 34 1 -0.8694 5.1543 1.5131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845528434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -153.615199 kcal Electronic energy + Delta-G solvation = -20517.245832 eV Core-core repulsion = 17156.743998 eV Total energy + Delta-G solvation = -3360.501834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05029 -37.38336 -36.94268 -35.98695 -35.51934 -33.56417 -31.99406 -31.41388 -28.01404 -26.84971 -23.44805 -22.84980 -20.85572 -19.75464 -19.57179 -17.95658 -17.56759 -16.88060 -16.41602 -15.91251 -15.71635 -15.14281 -14.88121 -14.54187 -13.95424 -13.57467 -13.13435 -12.99211 -12.90334 -12.22190 -12.16846 -12.06815 -11.98322 -11.54008 -11.51785 -11.36001 -11.22271 -11.01447 -10.74915 -10.68860 -10.33699 -10.20062 -9.83417 -9.46945 -9.27543 -8.87340 -8.50532 -6.23422 -4.31214 0.07395 2.34113 2.79542 3.20765 3.26018 3.29133 3.40770 3.46882 3.71156 4.06249 4.27453 4.28534 4.74463 4.85433 5.07505 5.10451 5.21995 5.41276 5.59159 5.74650 6.19083 6.25116 6.41073 6.80250 6.89898 6.95074 7.11595 7.18640 7.55947 7.67802 7.87947 8.09442 8.53507 8.80907 9.34307 10.83181 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.004626 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.484355 B = 6051.640434 C = 6267.806734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.354 6.354 14 C 0.436 3.564 15 O -0.492 6.492 16 C 0.121 3.879 17 H 0.118 0.882 18 C -0.115 4.115 19 C -0.590 4.590 20 S 2.571 3.429 21 O -0.941 6.941 22 O -0.960 6.960 23 N -1.077 6.077 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 3.966 13.153 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.274 3.726 15 O -0.379 6.379 16 C 0.010 3.990 17 H 0.135 0.865 18 C -0.154 4.154 19 C -0.720 4.720 20 S 2.664 3.336 21 O -0.930 6.930 22 O -0.950 6.950 23 N -0.844 5.844 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.028 4.091 12.472 15.386 hybrid contribution 1.594 -0.122 -0.357 1.638 sum -6.435 3.969 12.114 14.280 Atomic orbital electron populations 1.21879 0.98250 0.99151 1.00828 1.22033 0.92642 0.99279 1.03455 1.20724 0.95072 0.88812 0.78538 0.93470 1.21021 0.89567 1.39196 1.06313 0.91308 1.24889 0.99259 0.94735 0.95035 1.69886 1.35437 1.37617 1.09490 0.86279 0.83829 0.78663 0.77387 1.20338 1.20974 1.19648 1.86472 1.33777 1.62380 1.44366 1.23431 0.81496 0.77914 0.89729 1.90668 1.55141 1.57046 1.35095 1.20755 0.94969 0.90323 0.92912 0.86470 1.22354 0.99410 0.97400 0.96242 1.30795 1.10520 1.15338 1.15372 1.06457 0.73768 0.75929 0.77445 1.93694 1.66676 1.71761 1.60830 1.93612 1.79665 1.41064 1.80630 1.54751 1.29651 1.38805 1.61144 0.94673 0.95050 0.92710 0.87293 0.93898 0.92321 0.87962 0.85509 0.83716 0.83610 0.71997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.57 37.15 0.32 -2.75 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.61 2.25 -27.88 -0.06 5.55 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.06 8.90 -34.44 -0.31 -14.36 16 6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.91 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 O -0.35 -7.66 9.81 -39.27 -0.39 -8.04 16 14 C 0.44 8.20 5.40 36.01 0.19 8.39 16 15 O -0.49 -10.88 13.66 -18.75 -0.26 -11.14 16 16 C 0.12 1.51 3.66 -69.01 -0.25 1.26 16 17 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.11 -1.09 6.06 -25.26 -0.15 -1.24 16 19 C -0.59 -4.08 7.66 38.52 0.29 -3.79 16 20 S 2.57 29.55 6.47 -107.50 -0.70 28.86 16 21 O -0.94 -15.05 18.14 -57.40 -1.04 -16.09 16 22 O -0.96 -13.16 18.15 -57.40 -1.04 -14.21 16 23 N -1.08 -13.10 6.13 -5.82 -0.04 -13.13 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.62 5.87 -51.93 -0.30 0.32 16 26 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 27 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.10 1.10 7.64 -51.93 -0.40 0.70 16 31 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.44 4.99 8.96 -40.36 -0.36 4.63 16 LS Contribution 296.12 15.07 4.46 4.46 Total: -1.00 -35.38 296.12 -7.83 -43.21 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.23 Total: 3.25 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.21 Total: -8.74 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.59 Total: -36.99 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.72 Total: -49.48 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -0.70 Total: 28.86 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.38 -7.83 -43.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845528434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.404 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds