Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47472 * 2 1 4 4 H 1.08999 * 109.46722 * 305.00427 * 3 2 1 5 5 C 1.50695 * 109.47249 * 185.00073 * 3 2 1 6 6 H 1.08000 * 119.99696 * 239.99645 * 5 3 2 7 7 C 1.37880 * 120.00180 * 60.00020 * 5 3 2 8 8 N 1.31510 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99954 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46784 * 89.99978 * 9 7 5 11 11 H 1.48496 * 109.47115 * 209.99871 * 9 7 5 12 12 H 1.48502 * 109.46948 * 330.00264 * 9 7 5 13 13 O 1.45200 * 109.46760 * 65.00021 * 3 2 1 14 14 C 1.34235 * 116.99805 * 270.00253 * 13 3 2 15 15 O 1.20824 * 120.00175 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99820 * 180.02562 * 14 13 3 17 17 H 1.09002 * 108.58377 * 40.69654 * 16 14 13 18 18 C 1.53195 * 108.64252 * 282.70145 * 16 14 13 19 19 C 1.55567 * 106.23792 * 211.51821 * 18 16 14 20 20 S 1.83901 * 99.64104 * 36.98898 * 19 18 16 21 21 O 1.42103 * 111.46651 * 75.85774 * 20 19 18 22 22 O 1.42099 * 111.46319 * 215.70792 * 20 19 18 23 23 N 1.46449 * 108.50536 * 158.61992 * 16 14 13 24 24 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47332 * 299.99948 * 1 2 3 26 26 H 1.09003 * 109.46942 * 59.99954 * 1 2 3 27 27 H 1.09001 * 109.47332 * 240.00052 * 2 1 3 28 28 H 1.09003 * 109.46942 * 120.00046 * 2 1 3 29 29 H 0.97001 * 119.99824 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.10268 * 330.70571 * 18 16 14 31 31 H 1.08998 * 110.10386 * 92.32864 * 18 16 14 32 32 H 1.09004 * 111.36840 * 154.59343 * 19 18 16 33 33 H 1.08994 * 111.36940 * 279.38131 * 19 18 16 34 34 H 0.96998 * 126.08496 * 302.69982 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5548 -0.3503 -0.7602 11 1 6.3830 0.9222 -2.8172 12 1 6.5569 2.0737 -0.6901 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5084 17 1 0.8590 3.9324 2.9589 18 6 -0.5088 2.3682 3.4927 19 6 -1.6418 3.0533 4.3095 20 16 -2.3970 4.0822 2.9854 21 8 -3.1889 3.2970 2.1047 22 8 -2.8506 5.3300 3.4917 23 7 -0.9955 4.4234 2.1381 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8293 -0.0619 -2.9495 30 1 -0.9051 1.5104 2.9492 31 1 0.2943 2.0521 4.1585 32 1 -2.3506 2.3214 4.6967 33 1 -1.2360 3.6716 5.1101 34 1 -0.8694 5.1543 1.5131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845528434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -182.100010 kcal Electronic energy + Delta-G solvation = -20518.481026 eV Core-core repulsion = 17156.743998 eV Total energy + Delta-G solvation = -3361.737028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57676 -38.54212 -38.05505 -37.12561 -36.90600 -35.47816 -33.34153 -32.80821 -29.60451 -28.26192 -25.22069 -23.96240 -22.37317 -21.27799 -20.65216 -19.17820 -18.83601 -18.55760 -17.55510 -17.33846 -17.08179 -16.64832 -16.34282 -15.78941 -15.07370 -14.76950 -14.49788 -14.40869 -14.12599 -13.47978 -13.35061 -13.33087 -13.23217 -13.09834 -13.09493 -12.99608 -12.76766 -12.50413 -12.41007 -12.13676 -11.74444 -11.58898 -11.47746 -11.34179 -10.81063 -10.58184 -10.44789 -8.25752 -6.42746 -0.76645 1.26233 1.43602 1.45059 1.49431 1.56654 2.03364 2.41986 2.59853 2.85656 3.04285 3.26529 3.52444 3.77538 4.01328 4.24773 4.37237 4.39018 4.41178 4.58095 4.64572 4.80098 4.83939 4.95956 5.11034 5.22849 5.40483 5.53405 5.69482 5.97228 6.00879 6.14839 6.63305 7.00157 7.29261 8.80713 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.004626 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.484355 B = 6051.640434 C = 6267.806734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.264 1.264 13 O -0.355 6.355 14 C 0.426 3.574 15 O -0.533 6.533 16 C 0.127 3.873 17 H 0.155 0.845 18 C -0.121 4.121 19 C -0.536 4.536 20 S 2.556 3.444 21 O -0.999 6.999 22 O -0.988 6.988 23 N -1.082 6.082 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 3.598 16.330 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.188 1.188 13 O -0.271 6.271 14 C 0.267 3.733 15 O -0.423 6.423 16 C 0.017 3.983 17 H 0.172 0.828 18 C -0.160 4.160 19 C -0.671 4.671 20 S 2.655 3.345 21 O -0.989 6.989 22 O -0.978 6.978 23 N -0.847 5.847 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.185 0.815 32 H 0.197 0.803 33 H 0.207 0.793 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -6.939 3.763 15.635 17.515 hybrid contribution 1.214 0.013 -1.311 1.786 sum -5.725 3.777 14.324 15.882 Atomic orbital electron populations 1.21747 0.96517 1.00588 1.00111 1.21861 0.94118 0.98121 1.02583 1.20356 0.94520 0.89310 0.78788 0.98084 1.21341 0.90462 1.39719 1.06839 0.91137 1.25805 1.04098 0.94009 0.94448 1.70028 1.37434 1.38061 1.09952 0.85222 0.77884 0.79187 0.77365 1.19150 1.20830 1.18843 1.86455 1.35581 1.62874 1.42144 1.24907 0.79909 0.76799 0.91636 1.90661 1.55870 1.58344 1.37393 1.21181 0.96468 0.90684 0.90000 0.82789 1.22577 1.01394 0.95895 0.96163 1.30638 1.09096 1.14371 1.12957 1.06714 0.73523 0.75825 0.78419 1.93626 1.68793 1.72499 1.63951 1.93571 1.80355 1.43008 1.80904 1.54861 1.29828 1.38422 1.61557 0.92018 0.93854 0.95354 0.89943 0.92770 0.92185 0.89413 0.81546 0.80274 0.79296 0.72184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.57 71.98 0.62 -5.09 16 2 C -0.13 -6.25 5.49 30.59 0.17 -6.08 16 3 C 0.22 11.69 2.25 29.85 0.07 11.76 16 4 H 0.00 0.08 7.16 -2.39 -0.02 0.06 16 5 C -0.55 -29.70 8.90 25.60 0.23 -29.48 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.92 -51.88 11.29 21.45 0.24 -51.64 16 9 Si 0.98 41.69 29.54 68.60 2.03 43.72 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 O -0.35 -15.29 9.81 -51.47 -0.50 -15.79 16 14 C 0.43 15.98 5.40 71.24 0.38 16.36 16 15 O -0.53 -24.51 13.66 21.97 0.30 -24.21 16 16 C 0.13 2.87 3.66 44.32 0.16 3.03 16 17 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 18 C -0.12 -1.75 6.06 31.54 0.19 -1.56 16 19 C -0.54 -4.54 7.66 72.87 0.56 -3.98 16 20 S 2.56 55.60 6.47 -56.49 -0.37 55.24 16 21 O -1.00 -32.63 18.14 -127.79 -2.32 -34.95 16 22 O -0.99 -26.28 18.15 -127.79 -2.32 -28.60 16 23 N -1.08 -25.38 6.13 -172.34 -1.06 -26.44 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.04 1.72 5.87 -2.39 -0.01 1.71 16 26 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 27 H 0.08 4.46 5.95 -2.39 -0.01 4.44 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.09 1.61 7.64 -2.39 -0.02 1.59 16 31 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.18 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.19 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.44 10.15 8.96 -93.00 -0.83 9.31 16 Total: -1.00 -82.23 296.12 -0.88 -83.11 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.30 Total: 13.28 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 2.82 Total: -13.73 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -0.81 Total: -78.08 kcal Atomic # 8 Polarization: -98.71 SS G_CDS: -4.84 Total: -103.55 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.37 Total: 55.24 kcal Total: -82.23 -0.88 -83.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845528434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.989 kcal (2) G-P(sol) polarization free energy of solvation -82.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds