Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35514 * 116.99901 * 2 1 4 4 C 1.39440 * 120.46363 * 179.97438 * 3 2 1 5 5 C 1.38194 * 118.50515 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.36617 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47405 * 89.99516 * 6 5 4 8 8 F 1.39900 * 109.47264 * 210.00070 * 6 5 4 9 9 F 1.39900 * 109.46803 * 329.99679 * 6 5 4 10 10 N 1.32461 * 119.27144 * 359.72803 * 5 4 3 11 11 C 1.32472 * 120.88536 * 0.54876 * 10 5 4 12 12 N 1.38390 * 119.18830 * 179.71719 * 11 10 5 13 13 C 1.46500 * 120.00090 * 179.73047 * 12 11 10 14 14 C 1.50706 * 109.46949 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72205 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 N 1.32482 * 121.62274 * 359.43970 * 11 10 5 23 23 H 1.09007 * 109.46845 * 300.00147 * 1 2 3 24 24 H 1.08996 * 109.47479 * 59.99430 * 1 2 3 25 25 H 1.08992 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.74495 * 0.04207 * 4 3 2 27 27 H 0.97010 * 120.00000 * 359.73307 * 12 11 10 28 28 H 1.09000 * 109.47175 * 60.00008 * 13 12 11 29 29 H 1.09001 * 109.47297 * 299.99516 * 13 12 11 30 30 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4361 1.2917 0.0005 5 6 4.0210 2.5438 0.0011 6 6 5.5215 2.6836 0.0022 7 9 5.9869 2.7269 -1.3163 8 9 5.8793 3.8642 0.6621 9 9 6.0913 1.5895 0.6622 10 7 3.2483 3.6196 -0.0045 11 6 1.9282 3.5088 0.0005 12 7 1.1546 4.6562 0.0004 13 6 -0.3069 4.5543 -0.0002 14 6 -0.9068 5.9368 0.0005 15 1 -0.2638 6.8045 0.0058 16 6 -2.2766 6.0938 -0.0004 17 7 -2.8002 7.3002 0.0007 18 14 -3.3889 4.5930 -0.0018 19 1 -3.6845 4.1947 1.3979 20 1 -4.6572 4.9175 -0.7025 21 1 -2.7089 3.4737 -0.7018 22 7 1.3304 2.3265 0.0000 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.0432 0.3986 0.0003 27 1 1.5800 5.5281 0.0007 28 1 -0.6340 4.0163 0.8896 29 1 -0.6333 4.0167 -0.8904 30 1 -3.7639 7.4107 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858517740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -146.059614 kcal Electronic energy + Delta-G solvation = -21289.519354 eV Core-core repulsion = 17284.337214 eV Total energy + Delta-G solvation = -4005.182140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.28358 -48.79480 -48.74307 -42.42450 -39.75953 -37.36881 -34.94052 -34.42566 -32.54572 -29.67499 -29.07516 -27.49441 -24.90298 -24.43566 -23.09762 -20.57110 -20.03527 -19.65868 -19.20144 -18.87763 -17.75290 -17.41802 -17.19149 -16.70046 -16.55659 -15.98939 -15.60180 -15.57050 -15.51579 -15.16503 -15.11456 -14.88517 -14.86885 -14.58628 -14.44448 -13.71866 -13.01626 -12.95223 -12.90263 -12.74684 -12.13821 -12.00995 -11.86284 -11.69012 -10.94303 -10.76165 -10.66570 -9.19193 -8.39634 -6.49034 -0.43542 0.01101 1.06566 1.36055 1.37028 1.48970 1.78085 1.85094 2.29011 2.37315 2.43970 2.93447 2.95807 3.14491 3.23985 3.64942 3.95244 4.10462 4.36555 4.40352 4.54170 4.71254 4.82034 5.02288 5.22626 5.47443 5.57014 5.98600 6.08981 6.45451 6.56897 7.03756 7.20041 8.75655 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.005118 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.933217 B = 5469.107519 C = 6568.943651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.291 6.291 3 C 0.406 3.594 4 C -0.258 4.258 5 C 0.147 3.853 6 C 0.540 3.460 7 F -0.165 7.165 8 F -0.167 7.167 9 F -0.155 7.155 10 N -0.578 5.578 11 C 0.598 3.402 12 N -0.668 5.668 13 C 0.255 3.745 14 C -0.556 4.556 15 H 0.049 0.951 16 C 0.023 3.977 17 N -0.935 5.935 18 Si 0.945 3.055 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.244 1.244 22 N -0.617 5.617 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.140 0.860 26 H 0.191 0.809 27 H 0.417 0.583 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 -17.147 0.026 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.194 6.194 3 C 0.215 3.785 4 C -0.286 4.286 5 C -0.001 4.001 6 C 0.485 3.515 7 F -0.146 7.146 8 F -0.148 7.148 9 F -0.136 7.136 10 N -0.306 5.306 11 C 0.240 3.760 12 N -0.300 5.300 13 C 0.131 3.869 14 C -0.594 4.594 15 H 0.067 0.933 16 C -0.177 4.177 17 N -0.573 5.573 18 Si 0.768 3.232 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.167 1.167 22 N -0.358 5.358 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.208 0.792 27 H 0.255 0.745 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.235 -16.499 0.018 19.961 hybrid contribution -0.177 -0.025 0.014 0.179 sum 11.058 -16.524 0.032 19.883 Atomic orbital electron populations 1.23247 0.75016 1.05598 1.02539 1.86250 1.24831 1.22211 1.86115 1.19833 0.89160 0.84506 0.84980 1.21272 0.92944 0.99566 1.14793 1.20958 0.93671 0.89792 0.95722 1.17383 0.85325 0.74391 0.74434 1.93253 1.89702 1.96121 1.35544 1.93244 1.92750 1.47908 1.80868 1.93247 1.85853 1.53710 1.80765 1.67413 1.04553 1.33308 1.25309 1.18828 0.84133 0.85943 0.87101 1.44662 1.06664 1.04253 1.74435 1.19167 0.75052 0.96023 0.96617 1.21293 0.92915 0.91857 1.53331 0.93258 1.25702 0.99404 0.99318 0.93262 1.70011 1.12985 1.23938 1.50404 0.85743 0.78191 0.79694 0.79599 1.18780 1.20393 1.16743 1.67579 1.41513 0.98233 1.28512 0.92532 0.92645 0.84205 0.79201 0.74517 0.95818 0.95629 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.41 113.37 1.18 1.80 16 2 O -0.29 -7.03 10.49 -88.17 -0.93 -7.96 16 3 C 0.41 11.73 7.53 84.85 0.64 12.37 16 4 C -0.26 -6.43 9.46 22.55 0.21 -6.21 16 5 C 0.15 4.16 6.31 42.45 0.27 4.43 16 6 C 0.54 13.04 3.45 71.24 0.25 13.29 16 7 F -0.16 -3.93 17.30 44.97 0.78 -3.15 16 8 F -0.17 -4.46 17.07 44.97 0.77 -3.70 16 9 F -0.15 -3.12 16.52 44.97 0.74 -2.38 16 10 N -0.58 -20.04 10.12 -186.27 -1.88 -21.93 16 11 C 0.60 22.54 8.42 261.51 2.20 24.75 16 12 N -0.67 -27.57 5.70 -354.81 -2.02 -29.59 16 13 C 0.25 11.66 4.47 85.63 0.38 12.05 16 14 C -0.56 -30.18 9.83 25.60 0.25 -29.93 16 15 H 0.05 2.92 7.84 -2.91 -0.02 2.89 16 16 C 0.02 1.28 5.47 84.66 0.46 1.74 16 17 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 18 Si 0.95 41.02 27.47 68.60 1.88 42.90 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 22 N -0.62 -21.73 8.52 -310.88 -2.65 -24.38 16 23 H 0.06 1.27 8.12 -2.38 -0.02 1.25 16 24 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 25 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.19 3.36 7.67 -2.91 -0.02 3.34 16 27 H 0.42 16.86 8.44 -92.70 -0.78 16.08 16 28 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 29 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16 30 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -61.77 284.67 3.21 -58.56 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.37 Total: 12.39 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 5.85 Total: 34.28 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.26 Total: -130.94 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.93 Total: -7.96 kcal Atomic # 9 Polarization: -11.52 SS G_CDS: 2.29 Total: -9.23 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.90 kcal Total: -61.77 3.21 -58.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858517740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.500 kcal (2) G-P(sol) polarization free energy of solvation -61.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds