Wall clock time and date at job start Mon Mar 30 2020 02:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00037 * 2 1 4 4 O 1.20822 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47007 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47121 * 179.97438 * 6 5 3 8 8 C 1.36937 * 119.99641 * 85.00071 * 7 6 5 9 9 H 1.08001 * 119.99863 * 215.80656 * 8 7 6 10 10 C 1.38815 * 120.00035 * 35.80617 * 8 7 6 11 11 N 1.31622 * 120.00146 * 22.41206 * 10 8 7 12 12 Si 1.86798 * 120.00018 * 202.40869 * 10 8 7 13 13 H 1.48501 * 109.47104 * 89.99853 * 12 10 8 14 14 H 1.48497 * 109.47314 * 210.00159 * 12 10 8 15 15 H 1.48499 * 109.47377 * 330.00210 * 12 10 8 16 16 S 1.65596 * 120.00379 * 265.00029 * 7 6 5 17 17 O 1.42092 * 104.27857 * 212.41448 * 16 7 6 18 18 O 1.42107 * 104.27545 * 340.26918 * 16 7 6 19 19 C 1.81402 * 104.44879 * 96.33775 * 16 7 6 20 20 C 1.52991 * 117.49917 * 253.62314 * 19 16 7 21 21 C 1.53003 * 60.00249 * 252.51260 * 20 19 16 22 22 H 1.08995 * 109.47436 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47199 * 300.00434 * 1 2 3 24 24 H 1.09002 * 109.47298 * 59.99770 * 1 2 3 25 25 H 1.08996 * 109.47158 * 59.99536 * 5 3 2 26 26 H 1.08998 * 109.46691 * 299.99751 * 5 3 2 27 27 H 1.09008 * 109.47023 * 59.99701 * 6 5 3 28 28 H 1.09004 * 109.46887 * 300.00048 * 6 5 3 29 29 H 0.96999 * 119.99968 * 180.02562 * 11 10 8 30 30 H 1.09002 * 115.54611 * 39.33627 * 19 16 7 31 31 H 1.08997 * 117.50598 * 0.02562 * 20 19 16 32 32 H 1.09003 * 117.49480 * 145.02291 * 20 19 16 33 33 H 1.08996 * 117.49654 * 252.51684 * 21 20 19 34 34 H 1.08997 * 117.49814 * 107.48996 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1523 2.7508 -1.1824 9 1 7.1069 2.2472 -1.2226 10 6 5.6240 3.3293 -2.3284 11 7 4.7306 4.2907 -2.2284 12 14 6.1811 2.7435 -4.0124 13 1 5.3028 1.6356 -4.4666 14 1 6.1001 3.8676 -4.9793 15 1 7.5833 2.2616 -3.9300 16 16 6.2835 2.9873 1.4275 17 8 7.4266 3.7591 1.0862 18 8 5.3088 3.4834 2.3348 19 6 6.7668 1.2969 1.8742 20 6 6.0099 0.6257 3.0219 21 6 7.4526 1.0923 3.2265 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 3.9557 0.7808 -0.8907 26 1 3.9563 0.7805 0.8892 27 1 3.6107 3.2364 0.8889 28 1 3.6101 3.2359 -0.8911 29 1 4.3611 4.6946 -3.0291 30 1 7.0888 0.6657 1.0460 31 1 5.2212 1.1995 3.5084 32 1 5.8337 -0.4475 2.9488 33 1 8.2254 0.3261 3.2880 34 1 7.6133 1.9733 3.8478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867739880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:03 Heat of formation + Delta-G solvation = -119.724797 kcal Electronic energy + Delta-G solvation = -20607.050672 eV Core-core repulsion = 17248.018435 eV Total energy + Delta-G solvation = -3359.032236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03424 -36.77726 -36.47152 -35.92934 -35.59948 -34.81026 -31.86128 -30.17887 -27.46049 -24.89464 -23.28462 -22.49976 -22.36120 -20.16229 -18.43953 -17.45564 -17.36400 -16.42466 -16.28693 -16.02296 -15.95116 -15.01960 -14.57469 -14.37892 -13.70867 -13.38774 -13.13243 -12.89696 -12.39337 -12.27614 -11.84407 -11.63425 -11.30450 -11.25810 -11.13758 -10.97407 -10.89748 -10.77452 -10.72724 -10.58746 -10.55426 -10.27629 -10.01086 -9.99013 -9.82423 -9.02940 -7.75419 -6.24044 -3.97957 1.28608 2.65646 3.04114 3.20560 3.28188 3.30429 3.43579 3.98865 4.35079 4.64108 4.82357 4.88522 4.99645 5.18969 5.21937 5.26794 5.29546 5.55321 5.61829 5.62838 5.75565 5.76685 5.90479 6.02441 6.09606 6.23552 6.56472 6.75287 7.18600 7.41417 7.75500 8.17379 8.39749 9.01499 9.37623 10.78395 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.009955 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.931171 B = 2811.874628 C = 4464.359205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.464 3.536 4 O -0.503 6.503 5 C -0.130 4.130 6 C 0.129 3.871 7 N -0.840 5.840 8 C -0.303 4.303 9 H 0.091 0.909 10 C 0.042 3.958 11 N -0.852 5.852 12 Si 0.912 3.088 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.269 1.269 16 S 2.590 3.410 17 O -0.959 6.959 18 O -0.987 6.987 19 C -0.676 4.676 20 C -0.133 4.133 21 C -0.139 4.139 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.268 0.732 30 H 0.155 0.845 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -10.938 5.244 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.306 3.694 4 O -0.389 6.389 5 C -0.170 4.170 6 C 0.001 3.999 7 N -0.670 5.670 8 C -0.437 4.437 9 H 0.109 0.891 10 C -0.166 4.166 11 N -0.490 5.490 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.193 1.193 16 S 2.687 3.313 17 O -0.949 6.949 18 O -0.977 6.977 19 C -0.781 4.781 20 C -0.170 4.170 21 C -0.177 4.177 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.792 -9.711 5.706 11.605 hybrid contribution 0.097 -1.025 -1.171 1.559 sum -2.695 -10.736 4.535 11.962 Atomic orbital electron populations 1.23164 0.77426 1.02983 1.02373 1.86538 1.22711 1.34522 1.84718 1.24141 0.92469 0.80897 0.71882 1.90659 1.67244 1.36196 1.44814 1.22089 0.85707 1.04018 1.05205 1.21148 0.81396 0.90772 1.06575 1.52489 1.11176 1.85438 1.17893 1.19008 1.05944 1.33838 0.84948 0.89149 1.25353 0.97487 0.93930 0.99826 1.69983 1.29043 1.20276 1.29730 0.86175 0.79255 0.78428 0.82268 1.20418 1.20984 1.19335 1.06108 0.74749 0.75525 0.74968 1.93483 1.54204 1.64745 1.82433 1.93445 1.59768 1.77124 1.67375 1.32953 1.15907 1.28419 1.00804 1.22731 0.95282 1.01551 0.97481 1.22640 0.96685 1.03929 0.94443 0.88684 0.92181 0.92140 0.87079 0.89163 0.90826 0.85907 0.92165 0.82664 0.86941 0.87675 0.87571 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.65 10.56 -39.25 -0.41 -6.07 16 3 C 0.46 8.46 7.96 36.01 0.29 8.75 16 4 O -0.50 -10.59 15.73 -18.75 -0.29 -10.88 16 5 C -0.13 -2.38 6.11 -27.88 -0.17 -2.55 16 6 C 0.13 2.95 4.54 -4.04 -0.02 2.93 16 7 N -0.84 -19.92 2.76 -59.90 -0.17 -20.09 16 8 C -0.30 -7.62 8.85 -15.06 -0.13 -7.76 16 9 H 0.09 2.16 7.92 -52.49 -0.42 1.75 16 10 C 0.04 1.08 4.99 -17.43 -0.09 0.99 16 11 N -0.85 -23.23 11.35 55.49 0.63 -22.60 16 12 Si 0.91 19.72 29.61 -169.99 -5.03 14.68 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 S 2.59 57.14 5.74 -107.50 -0.62 56.53 16 17 O -0.96 -24.75 17.35 -57.54 -1.00 -25.75 16 18 O -0.99 -23.17 15.71 -57.54 -0.90 -24.07 16 19 C -0.68 -11.00 6.60 -26.73 -0.18 -11.17 16 20 C -0.13 -1.77 10.16 -26.73 -0.27 -2.04 16 21 C -0.14 -1.85 10.30 -26.73 -0.28 -2.13 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 25 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.07 1.73 6.71 -51.92 -0.35 1.39 16 28 H 0.12 3.16 5.37 -51.93 -0.28 2.88 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.16 2.35 8.14 -51.93 -0.42 1.93 16 31 H 0.11 1.54 7.68 -51.93 -0.40 1.14 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -32.98 309.43 -7.29 -40.27 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.38 Total: 4.83 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 0.22 Total: -11.51 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.46 Total: -42.69 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -2.61 Total: -66.77 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.62 Total: 56.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.98 -7.29 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.455 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds