Wall clock time and date at job start Mon Mar 30 2020 02:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00037 * 2 1 4 4 O 1.20822 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47007 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47121 * 179.97438 * 6 5 3 8 8 C 1.36937 * 119.99641 * 85.00071 * 7 6 5 9 9 H 1.08001 * 119.99863 * 215.80656 * 8 7 6 10 10 C 1.38815 * 120.00035 * 35.80617 * 8 7 6 11 11 N 1.31622 * 120.00146 * 22.41206 * 10 8 7 12 12 Si 1.86798 * 120.00018 * 202.40869 * 10 8 7 13 13 H 1.48501 * 109.47104 * 89.99853 * 12 10 8 14 14 H 1.48497 * 109.47314 * 210.00159 * 12 10 8 15 15 H 1.48499 * 109.47377 * 330.00210 * 12 10 8 16 16 S 1.65596 * 120.00379 * 265.00029 * 7 6 5 17 17 O 1.42092 * 104.27857 * 212.41448 * 16 7 6 18 18 O 1.42107 * 104.27545 * 340.26918 * 16 7 6 19 19 C 1.81402 * 104.44879 * 96.33775 * 16 7 6 20 20 C 1.52991 * 117.49917 * 253.62314 * 19 16 7 21 21 C 1.53003 * 60.00249 * 252.51260 * 20 19 16 22 22 H 1.08995 * 109.47436 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47199 * 300.00434 * 1 2 3 24 24 H 1.09002 * 109.47298 * 59.99770 * 1 2 3 25 25 H 1.08996 * 109.47158 * 59.99536 * 5 3 2 26 26 H 1.08998 * 109.46691 * 299.99751 * 5 3 2 27 27 H 1.09008 * 109.47023 * 59.99701 * 6 5 3 28 28 H 1.09004 * 109.46887 * 300.00048 * 6 5 3 29 29 H 0.96999 * 119.99968 * 180.02562 * 11 10 8 30 30 H 1.09002 * 115.54611 * 39.33627 * 19 16 7 31 31 H 1.08997 * 117.50598 * 0.02562 * 20 19 16 32 32 H 1.09003 * 117.49480 * 145.02291 * 20 19 16 33 33 H 1.08996 * 117.49654 * 252.51684 * 21 20 19 34 34 H 1.08997 * 117.49814 * 107.48996 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1523 2.7508 -1.1824 9 1 7.1069 2.2472 -1.2226 10 6 5.6240 3.3293 -2.3284 11 7 4.7306 4.2907 -2.2284 12 14 6.1811 2.7435 -4.0124 13 1 5.3028 1.6356 -4.4666 14 1 6.1001 3.8676 -4.9793 15 1 7.5833 2.2616 -3.9300 16 16 6.2835 2.9873 1.4275 17 8 7.4266 3.7591 1.0862 18 8 5.3088 3.4834 2.3348 19 6 6.7668 1.2969 1.8742 20 6 6.0099 0.6257 3.0219 21 6 7.4526 1.0923 3.2265 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 3.9557 0.7808 -0.8907 26 1 3.9563 0.7805 0.8892 27 1 3.6107 3.2364 0.8889 28 1 3.6101 3.2359 -0.8911 29 1 4.3611 4.6946 -3.0291 30 1 7.0888 0.6657 1.0460 31 1 5.2212 1.1995 3.5084 32 1 5.8337 -0.4475 2.9488 33 1 8.2254 0.3261 3.2880 34 1 7.6133 1.9733 3.8478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867739880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:03 Heat of formation + Delta-G solvation = -143.326718 kcal Electronic energy + Delta-G solvation = -20608.074128 eV Core-core repulsion = 17248.018435 eV Total energy + Delta-G solvation = -3360.055692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42996 -38.15720 -37.96556 -37.57800 -37.21516 -36.65924 -33.69044 -31.83296 -28.61600 -26.67293 -24.79359 -23.90976 -23.45921 -21.60446 -20.23474 -19.08921 -18.86356 -17.97338 -17.84666 -17.44752 -17.37053 -16.58707 -16.23218 -15.90102 -15.19286 -14.88475 -14.50434 -14.34611 -14.00407 -13.78071 -13.17734 -13.07452 -13.04265 -12.83096 -12.80526 -12.63597 -12.51554 -12.38700 -12.00811 -11.98374 -11.94988 -11.78712 -11.63937 -11.49553 -11.39799 -10.83631 -9.61565 -8.14893 -5.93966 -0.37449 1.22650 1.50213 1.51030 1.61974 1.73797 2.11769 2.43564 2.61257 2.97869 3.26664 3.50224 3.68934 3.91263 3.99730 4.07373 4.23248 4.34117 4.36485 4.37568 4.60259 4.66990 4.72700 4.78039 4.87511 4.94516 5.08823 5.36096 5.40060 5.52771 5.89197 6.47689 6.79400 7.13094 7.46453 8.87554 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.009955 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.931171 B = 2811.874628 C = 4464.359205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.540 6.540 5 C -0.121 4.121 6 C 0.130 3.870 7 N -0.854 5.854 8 C -0.313 4.313 9 H 0.100 0.900 10 C -0.009 4.009 11 N -0.897 5.897 12 Si 0.975 3.025 13 H -0.265 1.265 14 H -0.294 1.294 15 H -0.257 1.257 16 S 2.582 3.418 17 O -1.011 7.011 18 O -1.015 7.015 19 C -0.673 4.673 20 C -0.118 4.118 21 C -0.129 4.129 22 H 0.138 0.862 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.265 0.735 30 H 0.176 0.824 31 H 0.106 0.894 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -14.696 5.943 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.161 4.161 6 C 0.002 3.998 7 N -0.684 5.684 8 C -0.447 4.447 9 H 0.118 0.882 10 C -0.213 4.213 11 N -0.537 5.537 12 Si 0.799 3.201 13 H -0.190 1.190 14 H -0.220 1.220 15 H -0.181 1.181 16 S 2.686 3.314 17 O -1.001 7.001 18 O -1.005 7.005 19 C -0.785 4.785 20 C -0.155 4.155 21 C -0.168 4.168 22 H 0.156 0.844 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.194 0.806 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.247 -13.434 6.373 15.038 hybrid contribution -0.099 0.066 -1.207 1.213 sum -2.346 -13.368 5.166 14.522 Atomic orbital electron populations 1.23556 0.75100 1.05766 1.02310 1.86504 1.24855 1.32416 1.83919 1.24046 0.92452 0.81196 0.71026 1.90653 1.67993 1.37647 1.46724 1.21871 0.86184 1.00847 1.07186 1.20888 0.81255 0.93658 1.03964 1.52548 1.11419 1.86176 1.18242 1.19351 1.06184 1.33480 0.85663 0.88217 1.26240 0.97685 0.93874 1.03461 1.70138 1.31095 1.22105 1.30358 0.85204 0.79499 0.77786 0.77589 1.19050 1.21996 1.18093 1.05746 0.73568 0.77907 0.74179 1.93419 1.55110 1.68532 1.83076 1.93407 1.60356 1.79420 1.67304 1.32268 1.19842 1.22992 1.03378 1.23060 0.95140 1.03448 0.93900 1.23044 0.97976 1.04849 0.90929 0.84427 0.92050 0.92563 0.86050 0.85998 0.92868 0.89177 0.92551 0.80649 0.87583 0.83668 0.83831 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.28 10.56 -51.40 -0.54 -10.83 16 3 C 0.47 16.80 7.96 71.24 0.57 17.37 16 4 O -0.54 -23.25 15.73 21.98 0.35 -22.90 16 5 C -0.12 -4.32 6.11 29.85 0.18 -4.14 16 6 C 0.13 6.14 4.54 86.38 0.39 6.53 16 7 N -0.85 -41.26 2.76 -343.44 -0.95 -42.21 16 8 C -0.31 -15.94 8.85 84.03 0.74 -15.20 16 9 H 0.10 4.75 7.92 -2.91 -0.02 4.72 16 10 C -0.01 -0.47 4.99 84.86 0.42 -0.05 16 11 N -0.90 -51.17 11.35 21.65 0.25 -50.92 16 12 Si 0.98 40.72 29.61 68.60 2.03 42.75 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 14 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 16 S 2.58 114.91 5.74 -56.49 -0.32 114.59 16 17 O -1.01 -53.69 17.35 -127.65 -2.21 -55.90 16 18 O -1.01 -48.83 15.71 -127.65 -2.01 -50.83 16 19 C -0.67 -19.76 6.60 30.59 0.20 -19.56 16 20 C -0.12 -2.59 10.16 30.59 0.31 -2.28 16 21 C -0.13 -2.90 10.30 30.60 0.32 -2.58 16 22 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 24 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 25 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 26 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 27 H 0.05 2.64 6.71 -2.38 -0.02 2.63 16 28 H 0.09 4.90 5.37 -2.38 -0.01 4.88 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.18 4.58 8.14 -2.39 -0.02 4.56 16 31 H 0.11 2.55 7.68 -2.39 -0.02 2.53 16 32 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -76.15 309.43 2.03 -74.12 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.10 Total: 20.31 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.33 Total: -18.17 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -0.70 Total: -93.13 kcal Atomic # 8 Polarization: -136.05 SS G_CDS: -4.42 Total: -140.47 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: 114.91 SS G_CDS: -0.32 Total: 114.59 kcal Total: -76.15 2.03 -74.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.206 kcal (2) G-P(sol) polarization free energy of solvation -76.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds