Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47228 * 120.00988 * 2 1 3 5 5 H 1.08000 * 120.00450 * 119.99874 * 4 2 1 6 6 C 1.37884 * 119.99671 * 299.99245 * 4 2 1 7 7 N 1.31512 * 119.99957 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99901 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47155 * 89.99862 * 8 6 4 10 10 H 1.48504 * 109.47125 * 209.99171 * 8 6 4 11 11 H 1.48490 * 109.47452 * 329.99654 * 8 6 4 12 12 C 1.50707 * 109.46962 * 240.00469 * 2 1 3 13 13 O 1.21284 * 120.00068 * 240.00003 * 12 2 1 14 14 N 1.34781 * 119.99743 * 59.99816 * 12 2 1 15 15 C 1.39643 * 119.99751 * 185.53071 * 14 12 2 16 16 C 1.36200 * 120.11827 * 24.97140 * 15 14 12 17 17 C 1.39324 * 121.49662 * 179.72580 * 16 15 14 18 18 C 1.35553 * 121.66993 * 0.51187 * 17 16 15 19 19 C 1.41835 * 120.04096 * 359.49215 * 18 17 16 20 20 N 1.32323 * 130.97849 * 180.25524 * 19 18 17 21 21 S 1.55546 * 109.40434 * 179.97438 * 20 19 18 22 22 N 1.55543 * 100.18289 * 359.97438 * 21 20 19 23 23 C 1.32225 * 109.42279 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.46997 * 299.99357 * 1 2 3 25 25 H 1.08997 * 109.47150 * 59.99183 * 1 2 3 26 26 H 1.08997 * 109.47400 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00445 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00202 * 5.54300 * 14 12 2 29 29 H 1.08001 * 119.24660 * 359.96807 * 16 15 14 30 30 H 1.08001 * 119.16253 * 180.27950 * 17 16 15 31 31 H 1.08003 * 119.98614 * 179.76231 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 2.1373 -0.8600 3.5564 8 14 0.6250 1.2788 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9761 1.9947 3.9070 11 1 0.8472 2.1763 1.4923 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6965 -1.1194 14 7 1.7066 -0.2497 -2.4547 15 6 2.0739 -0.9711 -3.5925 16 6 2.2845 -2.3143 -3.5118 17 6 2.6463 -3.0628 -4.6298 18 6 2.8154 -2.4890 -5.8462 19 6 2.6133 -1.0944 -6.0077 20 7 2.7117 -0.3215 -7.0772 21 16 2.3779 1.1466 -6.6863 22 7 2.0819 0.9669 -5.1699 23 6 2.2280 -0.3055 -4.8412 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9027 -0.5289 4.4375 28 1 1.2172 0.5829 -2.5452 29 1 2.1646 -2.8109 -2.5603 30 1 2.7995 -4.1266 -4.5238 31 1 3.0999 -3.0947 -6.6939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876034903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = 51.808634 kcal Electronic energy + Delta-G solvation = -18583.089961 eV Core-core repulsion = 15571.097643 eV Total energy + Delta-G solvation = -3011.992318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15655 -39.45860 -36.31301 -34.80767 -34.00393 -33.06940 -31.34964 -28.93930 -27.45951 -25.23240 -23.66323 -22.74841 -21.34082 -19.84097 -19.28310 -17.72307 -17.19212 -16.81639 -15.96436 -15.51936 -15.45447 -14.90675 -14.65057 -14.34556 -13.39530 -13.00520 -12.56273 -12.39455 -12.33504 -11.87988 -11.87272 -11.71575 -11.68331 -11.09468 -11.02500 -10.96661 -10.68734 -10.37921 -9.92346 -9.71255 -9.20327 -8.91925 -8.72461 -8.64430 -7.63064 -6.12201 -4.13810 -0.16194 1.31828 1.38659 1.66624 1.74585 3.16644 3.20926 3.26858 3.30702 3.32863 3.72805 4.21246 4.31676 4.86500 4.91488 4.97521 5.16848 5.35475 5.40090 5.73227 5.90176 6.02586 6.15113 6.23263 6.30301 6.37709 6.46398 6.62584 6.63892 7.03968 7.07250 7.41507 7.80327 8.43250 8.73301 9.05388 9.45533 11.00345 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.004636 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.169597 B = 6037.595030 C = 6722.870449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.001 4.001 3 H 0.056 0.944 4 C -0.510 4.510 5 H 0.096 0.904 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.267 1.267 12 C 0.528 3.472 13 O -0.501 6.501 14 N -0.673 5.673 15 C 0.216 3.784 16 C -0.143 4.143 17 C -0.048 4.048 18 C -0.117 4.117 19 C 0.106 3.894 20 N -0.603 5.603 21 S 0.774 5.226 22 N -0.586 5.586 23 C 0.063 3.937 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.413 0.587 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 2.603 -20.039 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.074 0.926 4 C -0.548 4.548 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.318 3.682 13 O -0.373 6.373 14 N -0.316 5.316 15 C 0.112 3.888 16 C -0.170 4.170 17 C -0.073 4.073 18 C -0.142 4.142 19 C -0.054 4.054 20 N -0.453 5.453 21 S 0.821 5.179 22 N -0.438 5.438 23 C -0.099 4.099 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.248 0.752 29 H 0.182 0.818 30 H 0.157 0.843 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.012 3.840 -20.933 21.377 hybrid contribution -0.789 -0.097 1.157 1.404 sum -2.801 3.743 -19.776 20.321 Atomic orbital electron populations 1.22142 0.96899 1.01830 0.99564 1.19345 0.93459 0.97755 0.91746 0.92607 1.20881 1.32568 1.14320 0.87036 0.88653 1.24954 0.95719 0.96516 0.95718 1.69868 1.45121 1.40047 0.97928 0.86938 0.80754 0.83787 0.77243 1.20386 1.22173 1.19241 1.21664 0.78359 0.84784 0.83400 1.90546 1.35077 1.25843 1.85827 1.44004 1.56649 1.26539 1.04425 1.16792 0.98666 0.90415 0.82935 1.21133 1.02880 0.91434 1.01576 1.20681 0.95077 1.00580 0.90974 1.20104 1.06276 0.89041 0.98798 1.21137 1.01381 0.97015 0.85837 1.72238 1.28964 1.10570 1.33576 1.78436 1.38568 1.07460 0.93477 1.72076 1.27113 1.22820 1.21761 1.21216 1.04997 0.86827 0.96899 0.92930 0.94727 0.92055 0.92421 0.75156 0.81801 0.84262 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.58 37.16 0.32 -2.58 16 2 C 0.00 -0.03 2.23 -92.92 -0.21 -0.24 16 3 H 0.06 1.23 7.20 -51.93 -0.37 0.85 16 4 C -0.51 -14.17 8.96 -34.44 -0.31 -14.47 16 5 H 0.10 2.99 7.00 -52.49 -0.37 2.63 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.88 20.76 24.37 -169.99 -4.14 16.61 16 9 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -5.86 6.53 56.52 0.37 -5.49 16 12 C 0.53 11.02 6.94 -10.98 -0.08 10.94 16 13 O -0.50 -11.81 12.62 5.55 0.07 -11.74 16 14 N -0.67 -11.49 5.22 -9.69 -0.05 -11.54 16 15 C 0.22 3.51 6.46 -83.46 -0.54 2.97 16 16 C -0.14 -2.19 8.62 -39.91 -0.34 -2.53 16 17 C -0.05 -0.57 9.88 -40.14 -0.40 -0.97 16 18 C -0.12 -1.40 10.08 -39.17 -0.39 -1.79 16 19 C 0.11 1.47 7.16 -83.17 -0.60 0.87 16 20 N -0.60 -7.79 11.44 25.59 0.29 -7.50 16 21 S 0.77 8.02 23.60 -107.50 -2.54 5.48 16 22 N -0.59 -8.09 11.43 25.63 0.29 -7.80 16 23 C 0.06 0.94 7.08 -83.02 -0.59 0.36 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.03 0.55 7.70 -51.93 -0.40 0.15 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.41 6.21 8.39 -40.82 -0.34 5.86 16 29 H 0.16 2.82 5.67 -52.49 -0.30 2.53 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -32.60 276.37 -6.76 -39.36 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.40 Total: 4.53 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.23 Total: -5.48 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 1.31 Total: -52.93 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.14 Total: 16.61 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -2.54 Total: 5.48 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.60 -6.76 -39.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876034903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.173 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds