Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39619 * 120.54968 * 308.73766 * 3 2 1 5 5 N 1.31662 * 120.56726 * 179.72495 * 4 3 2 6 6 C 1.32062 * 121.86967 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 119.47054 * 179.97438 * 6 5 4 8 8 C 1.38508 * 121.05890 * 359.97438 * 6 5 4 9 9 C 1.50703 * 120.34522 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47191 * 278.63842 * 9 8 6 11 11 C 1.36931 * 119.99870 * 96.12207 * 10 9 8 12 12 H 1.08000 * 119.99859 * 223.41083 * 11 10 9 13 13 C 1.38809 * 120.00193 * 43.42334 * 11 10 9 14 14 N 1.31622 * 119.99928 * 207.91245 * 13 11 10 15 15 Si 1.86798 * 120.00260 * 27.91140 * 13 11 10 16 16 H 1.48503 * 109.47147 * 94.42341 * 15 13 11 17 17 H 1.48494 * 109.47294 * 214.42739 * 15 13 11 18 18 H 1.48503 * 109.46954 * 334.42430 * 15 13 11 19 19 C 1.46500 * 119.99517 * 276.12041 * 10 9 8 20 20 C 1.53003 * 117.49518 * 183.42384 * 19 10 9 21 21 C 1.53001 * 117.49640 * 114.76570 * 19 10 9 22 22 C 1.38294 * 119.30283 * 0.02562 * 8 6 5 23 23 H 1.07997 * 119.71729 * 359.74997 * 4 3 2 24 24 H 1.09001 * 109.47034 * 38.63961 * 9 8 6 25 25 H 1.09000 * 109.46820 * 158.63440 * 9 8 6 26 26 H 0.97002 * 120.00149 * 179.97438 * 14 13 11 27 27 H 1.08997 * 115.55359 * 329.09205 * 19 10 9 28 28 H 1.09002 * 117.49705 * 359.97438 * 20 19 10 29 29 H 1.09005 * 117.50191 * 145.02515 * 20 19 10 30 30 H 1.09005 * 117.49769 * 214.97783 * 21 19 10 31 31 H 1.08994 * 117.49964 * 359.97193 * 21 19 10 32 32 H 1.08000 * 120.84502 * 179.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2780 -0.7514 0.9379 5 7 4.5946 -0.7554 0.9348 6 6 5.2919 -0.0574 0.0569 7 17 7.0263 -0.1073 0.1101 8 6 4.6616 0.7139 -0.9055 9 6 5.4732 1.5046 -1.8991 10 7 5.9151 2.7576 -1.2818 11 6 7.1621 2.8427 -0.7225 12 1 7.2934 3.3295 0.2326 13 6 8.2574 2.3036 -1.3831 14 7 9.2974 1.8805 -0.6962 15 14 8.2554 2.1783 -3.2469 16 1 8.9265 3.3708 -3.8238 17 1 8.9827 0.9519 -3.6614 18 1 6.8551 2.1128 -3.7370 19 6 5.0228 3.9193 -1.2630 20 6 5.5710 5.2216 -0.6759 21 6 4.5306 4.4100 0.1001 22 6 3.2797 0.7517 -0.9443 23 1 2.7427 -1.3353 1.6719 24 1 6.3433 0.9225 -2.2027 25 1 4.8613 1.7263 -2.7735 26 1 10.0627 1.5034 -1.1578 27 1 4.3345 3.9972 -2.1045 28 1 6.5953 5.2137 -0.3034 29 1 5.2429 6.1562 -1.1309 30 1 3.5185 4.8110 0.1552 31 1 4.8703 3.8682 0.9827 32 1 2.7625 1.3450 -1.6838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876637578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = 101.114264 kcal Electronic energy + Delta-G solvation = -19066.457970 eV Core-core repulsion = 16054.559999 eV Total energy + Delta-G solvation = -3011.897971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41352 -38.82202 -37.80679 -37.13773 -35.60245 -34.17220 -33.18391 -31.82709 -27.65904 -25.72157 -25.41515 -23.72088 -22.90176 -21.45394 -19.80477 -18.30208 -18.10117 -18.01924 -16.92389 -16.73824 -15.75168 -15.48040 -15.09033 -14.63222 -14.60001 -14.39892 -14.33131 -14.05552 -14.02876 -13.62077 -13.24345 -12.70935 -12.49779 -12.32856 -12.16242 -12.01129 -11.77598 -11.64952 -11.32376 -11.02147 -10.73501 -10.67253 -10.26553 -9.74947 -8.44931 -8.06624 -5.43931 -0.55150 0.15054 1.19033 1.44336 1.53602 1.56671 1.60107 1.83238 2.56379 2.69368 2.73922 3.16419 3.35635 3.41435 3.53956 3.72438 3.83924 4.01329 4.35722 4.38849 4.46560 4.54777 4.65888 4.83801 4.96541 5.00794 5.08937 5.13490 5.34446 5.41571 5.60921 6.05374 6.33707 6.41119 6.66988 7.13039 7.75780 8.18032 9.10413 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.007914 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.485863 B = 3536.980311 C = 4295.186087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.293 3.707 3 C -0.083 4.083 4 C 0.164 3.836 5 N -0.505 5.505 6 C 0.185 3.815 7 Cl 0.003 6.997 8 C -0.135 4.135 9 C 0.178 3.822 10 N -0.571 5.571 11 C -0.245 4.245 12 H 0.031 0.969 13 C 0.024 3.976 14 N -0.915 5.915 15 Si 0.891 3.109 16 H -0.303 1.303 17 H -0.304 1.304 18 H -0.228 1.228 19 C 0.109 3.891 20 C -0.188 4.188 21 C -0.206 4.206 22 C 0.004 3.996 23 H 0.200 0.800 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.258 0.742 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 -2.264 -2.458 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.023 4.023 3 C -0.089 4.089 4 C 0.002 3.998 5 N -0.215 5.215 6 C 0.022 3.978 7 Cl 0.032 6.968 8 C -0.141 4.141 9 C 0.052 3.948 10 N -0.289 5.289 11 C -0.374 4.374 12 H 0.048 0.952 13 C -0.175 4.175 14 N -0.556 5.556 15 Si 0.719 3.281 16 H -0.232 1.232 17 H -0.231 1.231 18 H -0.150 1.150 19 C 0.002 3.998 20 C -0.226 4.226 21 C -0.246 4.246 22 C -0.025 4.025 23 H 0.216 0.784 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.893 -2.830 -1.869 13.332 hybrid contribution 1.182 0.397 -0.896 1.535 sum -11.711 -2.433 -2.765 12.277 Atomic orbital electron populations 1.81294 1.12516 1.09388 1.08881 1.25074 0.91663 0.92700 0.92828 1.16889 0.85198 1.05100 1.01757 1.23237 0.87512 0.93750 0.95257 1.67250 1.09075 1.21416 1.23781 1.22423 0.89656 0.93413 0.92289 1.98573 1.04424 1.96623 1.97132 1.21564 0.94992 0.97574 0.99970 1.20388 0.96165 0.86025 0.92179 1.43645 1.12457 1.05239 1.67534 1.18012 0.83006 1.36721 0.99699 0.95174 1.25778 0.94988 0.97301 0.99467 1.70070 1.08567 1.40594 1.36347 0.86625 0.79861 0.75713 0.85944 1.23169 1.23109 1.15027 1.21489 0.96282 0.87253 0.94771 1.23056 0.98459 0.95616 1.05448 1.23272 0.98457 1.05498 0.97410 1.21728 0.91495 0.93452 0.95788 0.78352 0.92462 0.89266 0.93318 0.85702 0.91237 0.87436 0.87633 0.92637 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.19 18.54 19.00 0.35 -10.83 16 2 C 0.29 6.25 15.37 88.33 1.36 7.61 16 3 C -0.08 -1.78 5.75 -21.25 -0.12 -1.90 16 4 C 0.16 3.75 10.92 85.05 0.93 4.68 16 5 N -0.50 -15.81 10.32 -185.54 -1.92 -17.73 16 6 C 0.19 6.55 7.27 84.72 0.62 7.16 16 7 Cl 0.00 0.14 24.11 -2.72 -0.07 0.08 16 8 C -0.13 -4.16 5.47 -19.79 -0.11 -4.26 16 9 C 0.18 6.10 3.51 85.63 0.30 6.40 16 10 N -0.57 -22.43 2.25 -682.34 -1.54 -23.97 16 11 C -0.24 -11.96 7.03 84.03 0.59 -11.37 16 12 H 0.03 1.75 7.38 -2.91 -0.02 1.72 16 13 C 0.02 1.24 3.79 84.86 0.32 1.56 16 14 N -0.91 -50.80 13.38 21.65 0.29 -50.51 16 15 Si 0.89 39.92 26.41 68.60 1.81 41.73 16 16 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.23 -8.82 5.70 99.48 0.57 -8.25 16 19 C 0.11 3.54 6.58 44.99 0.30 3.84 16 20 C -0.19 -6.26 9.80 30.62 0.30 -5.96 16 21 C -0.21 -6.48 10.36 30.62 0.32 -6.17 16 22 C 0.00 0.09 9.55 22.73 0.22 0.30 16 23 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 24 H 0.06 2.23 4.14 -2.39 -0.01 2.22 16 25 H 0.09 2.43 7.93 -2.39 -0.02 2.41 16 26 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.07 2.84 6.71 -2.39 -0.02 2.83 16 29 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 30 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -60.40 293.47 4.97 -55.43 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.02 Total: 3.90 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.02 Total: 1.89 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.81 Total: -103.04 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.81 Total: 41.73 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.07 Total: 0.08 kcal Total: -60.40 4.97 -55.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876637578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.545 kcal (2) G-P(sol) polarization free energy of solvation -60.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds