Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99861 * 2 1 4 4 C 1.50701 * 109.47474 * 269.99913 * 3 2 1 5 5 H 1.08002 * 119.99679 * 0.02562 * 4 3 2 6 6 C 1.37869 * 120.00262 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00272 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00174 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46855 * 89.99839 * 8 6 4 10 10 H 1.48499 * 109.47581 * 209.99825 * 8 6 4 11 11 H 1.48504 * 109.47272 * 330.00322 * 8 6 4 12 12 C 1.34776 * 120.00282 * 179.97438 * 2 1 3 13 13 O 1.21621 * 119.99921 * 184.40139 * 12 2 1 14 14 C 1.47306 * 119.99773 * 4.40866 * 12 2 1 15 15 C 1.38371 * 120.57435 * 311.35175 * 14 12 2 16 16 C 1.38867 * 121.15668 * 179.75499 * 15 14 12 17 17 C 1.35571 * 122.42896 * 0.56042 * 16 15 14 18 18 C 1.41632 * 120.90778 * 359.44004 * 17 16 15 19 19 N 1.32401 * 131.03899 * 180.25185 * 18 17 16 20 20 S 1.55551 * 109.37601 * 180.02562 * 19 18 17 21 21 N 1.55558 * 100.17680 * 359.97438 * 20 19 18 22 22 C 1.31859 * 109.44567 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47606 * 272.96812 * 1 2 3 24 24 H 1.09002 * 109.47181 * 32.96725 * 1 2 3 25 25 H 1.09007 * 109.46910 * 152.96725 * 1 2 3 26 26 H 1.09006 * 109.47160 * 30.00030 * 3 2 1 27 27 H 1.09004 * 109.47270 * 149.99357 * 3 2 1 28 28 H 0.96995 * 120.00458 * 179.97438 * 7 6 4 29 29 H 1.07999 * 119.41996 * 0.03724 * 15 14 12 30 30 H 1.07990 * 118.78484 * 180.27523 * 16 15 14 31 31 H 1.08002 * 119.54678 * 179.70978 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2574 -2.9126 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5069 0.1238 10 1 3.7498 5.3554 -0.6647 11 1 2.8272 3.7597 0.9111 12 6 2.1389 -1.1672 0.0005 13 8 3.3524 -1.1686 0.0814 14 6 1.4057 -2.4410 -0.0970 15 6 0.3152 -2.6896 0.7177 16 6 -0.3879 -3.8841 0.6325 17 6 -0.0456 -4.8689 -0.2341 18 6 1.0547 -4.7150 -1.1125 19 7 1.5567 -5.5293 -2.0279 20 16 2.7799 -4.8500 -2.7077 21 7 2.8035 -3.4964 -1.9415 22 6 1.8206 -3.4721 -1.0629 23 1 -0.3634 0.0532 1.0263 24 1 -0.3634 0.8622 -0.5592 25 1 -0.3633 -0.9155 -0.4671 26 1 1.6083 2.0284 0.5139 27 1 3.1499 1.1385 0.5139 28 1 3.8224 4.0833 -3.0899 29 1 0.0026 -1.9395 1.4291 30 1 -1.2358 -4.0360 1.2837 31 1 -0.6226 -5.7816 -0.2580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877979559.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = 29.845259 kcal Electronic energy + Delta-G solvation = -18722.863570 eV Core-core repulsion = 15709.918849 eV Total energy + Delta-G solvation = -3012.944721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98855 -40.47184 -37.36941 -36.62058 -34.94028 -34.63357 -31.89657 -30.02557 -28.69408 -27.41979 -25.29164 -23.51444 -23.12916 -20.87115 -19.91930 -19.18904 -18.85102 -17.66563 -17.48338 -16.90164 -16.77273 -16.11564 -16.04539 -15.59303 -14.86915 -14.38273 -13.97078 -13.73355 -13.67993 -13.29285 -13.06445 -12.96375 -12.83179 -12.71037 -12.58180 -12.36923 -12.07592 -12.03031 -11.85040 -11.77346 -10.86111 -10.79294 -9.79941 -9.52587 -9.36042 -8.36612 -6.42923 -1.26625 0.35162 0.36897 0.43376 0.68932 1.31221 1.36837 1.45167 1.69667 2.20598 2.29697 2.56999 2.97631 3.03350 3.59825 3.80561 3.92377 4.01046 4.23361 4.36878 4.62772 4.65275 4.82623 4.86613 4.93493 4.97452 5.21176 5.26672 5.31656 5.42634 5.55862 5.82011 6.20261 6.57861 6.59211 7.16046 7.31690 8.80981 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.005377 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.290729 B = 5206.208237 C = 5945.325061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.224 3.776 4 C -0.541 4.541 5 H 0.019 0.981 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.230 1.230 12 C 0.547 3.453 13 O -0.587 6.587 14 C -0.114 4.114 15 C -0.026 4.026 16 C -0.082 4.082 17 C -0.045 4.045 18 C 0.065 3.935 19 N -0.599 5.599 20 S 0.833 5.167 21 N -0.638 5.638 22 C 0.082 3.918 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.269 0.731 29 H 0.178 0.822 30 H 0.203 0.797 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 -17.205 9.353 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.328 5.328 3 C 0.102 3.898 4 C -0.579 4.579 5 H 0.037 0.963 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.153 1.153 12 C 0.335 3.665 13 O -0.468 6.468 14 C -0.124 4.124 15 C -0.051 4.051 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.095 4.095 19 N -0.451 5.451 20 S 0.881 5.119 21 N -0.488 5.488 22 C -0.079 4.079 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.195 0.805 30 H 0.220 0.780 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.846 -17.826 7.572 22.198 hybrid contribution 0.193 1.486 0.657 1.636 sum -10.654 -16.340 8.229 21.171 Atomic orbital electron populations 1.22280 0.77225 1.03967 1.03906 1.47852 1.08750 1.05368 1.70811 1.19396 0.92998 0.82160 0.95246 1.21557 1.37189 1.06805 0.92375 0.96262 1.25934 0.95070 0.98944 0.98954 1.70064 1.42630 1.24510 1.21556 0.85644 0.79553 0.77564 0.79734 1.20461 1.19742 1.15260 1.18556 0.86789 0.84596 0.76526 1.90725 1.16242 1.87961 1.51848 1.20209 1.00002 0.92072 1.00095 1.21933 0.89121 0.99209 0.94835 1.21139 1.00755 0.90348 0.98339 1.20854 0.91989 1.01997 0.92026 1.21665 1.00852 0.88666 0.98330 1.72229 1.19210 1.36448 1.17192 1.78209 1.14772 0.91066 1.27827 1.71948 1.28492 1.30856 1.17487 1.22460 0.92079 0.96924 0.96448 0.88081 0.91656 0.89682 0.91923 0.96246 0.92202 0.80513 0.78028 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.89 9.08 127.77 1.16 3.05 16 2 N -0.60 -25.38 2.86 -855.15 -2.44 -27.82 16 3 C 0.22 11.25 4.28 85.63 0.37 11.62 16 4 C -0.54 -33.31 9.94 25.60 0.25 -33.06 16 5 H 0.02 1.34 8.06 -2.91 -0.02 1.32 16 6 C 0.01 0.53 5.47 84.65 0.46 0.99 16 7 N -0.95 -61.88 13.96 21.44 0.30 -61.58 16 8 Si 0.95 45.29 27.47 68.60 1.88 47.18 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.23 -9.54 6.54 99.48 0.65 -8.89 16 12 C 0.55 24.81 7.27 86.63 0.63 25.44 16 13 O -0.59 -33.21 16.62 -4.10 -0.07 -33.28 16 14 C -0.11 -3.87 5.10 -18.49 -0.09 -3.97 16 15 C -0.03 -0.51 7.55 22.45 0.17 -0.34 16 16 C -0.08 -0.95 9.82 21.80 0.21 -0.73 16 17 C -0.04 -0.72 10.02 22.49 0.23 -0.49 16 18 C 0.06 1.76 7.17 41.93 0.30 2.06 16 19 N -0.60 -16.22 11.44 -72.88 -0.83 -17.06 16 20 S 0.83 22.93 23.60 -56.49 -1.33 21.60 16 21 N -0.64 -25.46 11.42 -69.88 -0.80 -26.26 16 22 C 0.08 2.95 7.13 43.55 0.31 3.27 16 23 H 0.10 1.82 7.55 -2.39 -0.02 1.80 16 24 H 0.06 1.98 8.09 -2.39 -0.02 1.96 16 25 H 0.08 2.04 5.67 -2.38 -0.01 2.02 16 26 H 0.06 2.76 7.13 -2.38 -0.02 2.75 16 27 H 0.02 1.05 6.79 -2.39 -0.02 1.04 16 28 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 29 H 0.18 2.26 6.49 -2.91 -0.02 2.24 16 30 H 0.20 0.10 8.06 -2.92 -0.02 0.08 16 31 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -94.22 285.16 1.83 -92.40 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: 1.12 Total: -3.00 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.00 Total: 7.83 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -3.78 Total: -132.72 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.07 Total: -33.28 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.18 kcal Atomic # 16 Polarization: 22.93 SS G_CDS: -1.33 Total: 21.60 kcal Total: -94.22 1.83 -92.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877979559.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.241 kcal (2) G-P(sol) polarization free energy of solvation -94.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds