Wall clock time and date at job start Mon Mar 30 2020 02:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99727 * 2 1 4 4 O 1.20821 * 120.00694 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99760 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47232 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00342 * 275.00204 * 6 5 3 8 8 H 1.07996 * 120.00149 * 146.59788 * 7 6 5 9 9 C 1.38811 * 119.99531 * 326.60413 * 7 6 5 10 10 N 1.31612 * 120.00506 * 336.31121 * 9 7 6 11 11 Si 1.86806 * 119.99648 * 156.31166 * 9 7 6 12 12 H 1.48509 * 109.46931 * 89.99806 * 11 9 7 13 13 H 1.48498 * 109.46970 * 209.99747 * 11 9 7 14 14 H 1.48497 * 109.47396 * 329.99958 * 11 9 7 15 15 S 1.65599 * 119.99336 * 94.99848 * 6 5 3 16 16 O 1.42107 * 104.27540 * 211.41614 * 15 6 5 17 17 O 1.42097 * 104.28234 * 339.27441 * 15 6 5 18 18 C 1.81405 * 104.44812 * 95.34915 * 15 6 5 19 19 C 1.53783 * 113.61374 * 284.13390 * 18 15 6 20 20 C 1.53951 * 87.01604 * 220.04798 * 19 18 15 21 21 C 1.53774 * 87.11657 * 25.36239 * 20 19 18 22 22 H 1.09003 * 109.47421 * 300.00297 * 1 2 3 23 23 H 1.09004 * 109.47165 * 60.00383 * 1 2 3 24 24 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46746 * 59.99559 * 5 3 2 26 26 H 1.09001 * 109.46851 * 300.00175 * 5 3 2 27 27 H 0.97004 * 120.00494 * 180.02562 * 10 9 7 28 28 H 1.09002 * 112.85064 * 55.32744 * 18 15 6 29 29 H 1.09000 * 113.61319 * 334.56812 * 19 18 15 30 30 H 1.09003 * 113.61308 * 105.46660 * 19 18 15 31 31 H 1.09004 * 113.53861 * 270.80694 * 20 19 18 32 32 H 1.08999 * 113.66850 * 139.93574 * 20 19 18 33 33 H 1.09000 * 113.62025 * 220.09223 * 21 20 19 34 34 H 1.08999 * 113.69025 * 89.19573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.0772 3.3650 -1.1819 8 1 3.8472 4.4196 -1.2147 9 6 4.4696 2.7038 -2.3377 10 7 5.1794 1.5987 -2.2550 11 14 3.9900 3.3828 -4.0106 12 1 5.0417 4.3176 -4.4854 13 1 3.8490 2.2641 -4.9769 14 1 2.6981 4.1066 -3.8993 15 16 4.3357 3.4391 1.4283 16 8 3.9645 4.7929 1.2068 17 8 3.6823 2.6524 2.4148 18 6 6.1368 3.2905 1.5857 19 6 6.6046 1.8876 2.0075 20 6 7.6377 2.5903 2.9068 21 6 6.6810 3.7939 2.9330 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9564 0.7805 -0.8892 26 1 3.9556 0.7809 0.8908 27 1 5.4539 1.1368 -3.0626 28 1 6.6713 3.6880 0.7229 29 1 5.8535 1.3253 2.5622 30 1 7.0501 1.3134 1.1951 31 1 8.5836 2.7952 2.4053 32 1 7.7674 2.1144 3.8788 33 1 7.1882 4.7565 2.8668 34 1 5.9504 3.7551 3.7410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881910169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:40 Heat of formation + Delta-G solvation = -124.757691 kcal Electronic energy + Delta-G solvation = -21053.262636 eV Core-core repulsion = 17694.012157 eV Total energy + Delta-G solvation = -3359.250479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.59089 -37.92107 -36.26117 -35.79935 -35.07234 -34.62540 -31.71183 -28.47148 -26.41862 -25.54498 -25.36365 -24.05392 -20.53516 -19.38780 -18.49251 -17.28675 -17.02753 -16.82072 -16.00133 -15.59975 -15.44099 -15.18696 -14.70067 -14.36292 -13.46022 -13.05080 -12.90803 -12.81921 -12.22895 -12.03957 -11.89566 -11.62044 -11.55370 -11.49393 -11.14971 -11.05412 -10.86029 -10.82531 -10.57831 -10.32803 -10.25153 -10.17380 -10.09217 -9.73395 -9.37459 -9.15896 -7.97812 -6.66338 -4.19675 1.48641 3.04891 3.13589 3.15463 3.26279 3.40894 3.88789 4.18983 4.63334 4.81439 4.85377 5.05401 5.11113 5.29091 5.49366 5.56720 5.64013 5.69441 5.86792 5.91876 5.93735 5.97873 6.08420 6.13120 6.34647 6.46914 6.59656 6.76010 6.94477 7.13078 7.34015 8.19446 8.60842 8.65363 9.07483 10.32228 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.009562 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.773596 B = 2927.689755 C = 3931.279420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.445 3.555 4 O -0.497 6.497 5 C 0.134 3.866 6 N -0.800 5.800 7 C -0.248 4.248 8 H 0.110 0.890 9 C 0.034 3.966 10 N -0.838 5.838 11 Si 0.920 3.080 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.264 1.264 15 S 2.515 3.485 16 O -0.973 6.973 17 O -0.999 6.999 18 C -0.634 4.634 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.118 4.118 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.277 0.723 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -4.406 2.714 5.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.287 6.287 3 C 0.285 3.715 4 O -0.382 6.382 5 C 0.004 3.996 6 N -0.623 5.623 7 C -0.392 4.392 8 H 0.127 0.873 9 C -0.177 4.177 10 N -0.477 5.477 11 Si 0.745 3.255 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.188 1.188 15 S 2.616 3.384 16 O -0.963 6.963 17 O -0.989 6.989 18 C -0.737 4.737 19 C -0.143 4.143 20 C -0.167 4.167 21 C -0.157 4.157 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.165 0.835 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.999 -3.778 3.442 5.207 hybrid contribution 0.270 0.173 -1.083 1.129 sum 1.269 -3.605 2.360 4.491 Atomic orbital electron populations 1.23092 0.78134 1.02558 1.02084 1.86524 1.22180 1.34868 1.85103 1.25175 0.93524 0.80913 0.71885 1.90597 1.66847 1.36310 1.44450 1.20821 0.85083 0.86313 1.07376 1.52924 1.69690 1.18444 1.21215 1.19694 1.39174 0.96680 0.83670 0.87290 1.25672 0.94240 0.96845 1.00958 1.69863 1.29512 1.17669 1.30678 0.86007 0.80065 0.78945 0.80461 1.19701 1.20375 1.18770 1.11193 0.77777 0.74928 0.74462 1.93394 1.81625 1.36523 1.84788 1.93363 1.73214 1.70523 1.61762 1.32224 1.32890 1.04462 1.04078 1.22434 0.98833 0.93458 0.99560 1.22780 0.97522 0.96775 0.99650 1.22494 0.99517 0.98992 0.94684 0.92463 0.92453 0.88950 0.83478 0.88362 0.91300 0.84250 0.89382 0.90094 0.90190 0.91694 0.90876 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.13 10.57 -39.26 -0.41 -7.54 16 3 C 0.44 10.15 8.00 36.01 0.29 10.44 16 4 O -0.50 -12.80 16.09 -18.75 -0.30 -13.10 16 5 C 0.13 2.97 5.48 -5.19 -0.03 2.94 16 6 N -0.80 -19.39 2.30 -61.08 -0.14 -19.53 16 7 C -0.25 -6.27 9.02 -15.06 -0.14 -6.41 16 8 H 0.11 2.86 7.37 -52.49 -0.39 2.47 16 9 C 0.03 0.79 4.98 -17.43 -0.09 0.71 16 10 N -0.84 -19.38 11.26 55.49 0.63 -18.76 16 11 Si 0.92 18.96 29.61 -169.99 -5.03 13.93 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 15 S 2.51 59.22 5.26 -107.50 -0.57 58.66 16 16 O -0.97 -26.09 16.98 -57.54 -0.98 -27.06 16 17 O -1.00 -24.60 16.16 -57.54 -0.93 -25.53 16 18 C -0.63 -12.10 4.51 -25.92 -0.12 -12.21 16 19 C -0.10 -1.75 7.66 -25.83 -0.20 -1.95 16 20 C -0.13 -1.86 8.09 -25.83 -0.21 -2.07 16 21 C -0.12 -1.94 7.67 -25.92 -0.20 -2.13 16 22 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 23 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.15 3.28 5.30 -51.92 -0.27 3.00 16 26 H 0.10 1.96 7.45 -51.93 -0.39 1.57 16 27 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 28 H 0.14 2.67 8.14 -51.93 -0.42 2.25 16 29 H 0.09 1.47 7.57 -51.93 -0.39 1.08 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 LS Contribution 304.73 15.07 4.59 4.59 Total: -1.00 -30.86 304.73 -7.14 -38.00 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.38 Total: 5.42 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.38 Total: -9.07 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.48 Total: -38.29 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -2.62 Total: -73.24 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 59.22 SS G_CDS: -0.57 Total: 58.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.86 -7.14 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881910169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.755 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds