Wall clock time and date at job start Mon Mar 30 2020 02:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99727 * 2 1 4 4 O 1.20821 * 120.00694 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99760 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47232 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00342 * 275.00204 * 6 5 3 8 8 H 1.07996 * 120.00149 * 146.59788 * 7 6 5 9 9 C 1.38811 * 119.99531 * 326.60413 * 7 6 5 10 10 N 1.31612 * 120.00506 * 336.31121 * 9 7 6 11 11 Si 1.86806 * 119.99648 * 156.31166 * 9 7 6 12 12 H 1.48509 * 109.46931 * 89.99806 * 11 9 7 13 13 H 1.48498 * 109.46970 * 209.99747 * 11 9 7 14 14 H 1.48497 * 109.47396 * 329.99958 * 11 9 7 15 15 S 1.65599 * 119.99336 * 94.99848 * 6 5 3 16 16 O 1.42107 * 104.27540 * 211.41614 * 15 6 5 17 17 O 1.42097 * 104.28234 * 339.27441 * 15 6 5 18 18 C 1.81405 * 104.44812 * 95.34915 * 15 6 5 19 19 C 1.53783 * 113.61374 * 284.13390 * 18 15 6 20 20 C 1.53951 * 87.01604 * 220.04798 * 19 18 15 21 21 C 1.53774 * 87.11657 * 25.36239 * 20 19 18 22 22 H 1.09003 * 109.47421 * 300.00297 * 1 2 3 23 23 H 1.09004 * 109.47165 * 60.00383 * 1 2 3 24 24 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46746 * 59.99559 * 5 3 2 26 26 H 1.09001 * 109.46851 * 300.00175 * 5 3 2 27 27 H 0.97004 * 120.00494 * 180.02562 * 10 9 7 28 28 H 1.09002 * 112.85064 * 55.32744 * 18 15 6 29 29 H 1.09000 * 113.61319 * 334.56812 * 19 18 15 30 30 H 1.09003 * 113.61308 * 105.46660 * 19 18 15 31 31 H 1.09004 * 113.53861 * 270.80694 * 20 19 18 32 32 H 1.08999 * 113.66850 * 139.93574 * 20 19 18 33 33 H 1.09000 * 113.62025 * 220.09223 * 21 20 19 34 34 H 1.08999 * 113.69025 * 89.19573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.0772 3.3650 -1.1819 8 1 3.8472 4.4196 -1.2147 9 6 4.4696 2.7038 -2.3377 10 7 5.1794 1.5987 -2.2550 11 14 3.9900 3.3828 -4.0106 12 1 5.0417 4.3176 -4.4854 13 1 3.8490 2.2641 -4.9769 14 1 2.6981 4.1066 -3.8993 15 16 4.3357 3.4391 1.4283 16 8 3.9645 4.7929 1.2068 17 8 3.6823 2.6524 2.4148 18 6 6.1368 3.2905 1.5857 19 6 6.6046 1.8876 2.0075 20 6 7.6377 2.5903 2.9068 21 6 6.6810 3.7939 2.9330 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9564 0.7805 -0.8892 26 1 3.9556 0.7809 0.8908 27 1 5.4539 1.1368 -3.0626 28 1 6.6713 3.6880 0.7229 29 1 5.8535 1.3253 2.5622 30 1 7.0501 1.3134 1.1951 31 1 8.5836 2.7952 2.4053 32 1 7.7674 2.1144 3.8788 33 1 7.1882 4.7565 2.8668 34 1 5.9504 3.7551 3.7410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881910169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:40 Heat of formation + Delta-G solvation = -145.686256 kcal Electronic energy + Delta-G solvation = -21054.170167 eV Core-core repulsion = 17694.012157 eV Total energy + Delta-G solvation = -3360.158010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30328 -39.29504 -37.95444 -37.77305 -36.85647 -36.63113 -33.49664 -30.09536 -27.91043 -26.97908 -26.68897 -25.80573 -22.22884 -20.82670 -20.23527 -19.11249 -18.75559 -18.58991 -17.70609 -17.24370 -17.04701 -16.79932 -16.36080 -16.06271 -15.21132 -14.55200 -14.47250 -14.36792 -13.71259 -13.56337 -13.42402 -13.28914 -13.11042 -12.98389 -12.90477 -12.86181 -12.79461 -12.62753 -12.34459 -12.09795 -11.72374 -11.55532 -11.50914 -11.40438 -11.14145 -10.80367 -9.74843 -8.42113 -6.05899 -0.32331 1.34446 1.40904 1.47205 1.58982 1.79846 2.18161 2.45260 2.84508 3.23590 3.29276 3.52637 3.80732 3.88912 3.98025 4.10480 4.22338 4.33969 4.36170 4.62125 4.66276 4.70761 4.73716 4.87306 4.98119 5.07186 5.14989 5.20994 5.42234 5.45306 5.57854 6.35626 6.79293 6.92287 7.26950 8.58274 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.009562 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.773596 B = 2927.689755 C = 3931.279420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.442 3.558 4 O -0.537 6.537 5 C 0.129 3.871 6 N -0.818 5.818 7 C -0.293 4.293 8 H 0.081 0.919 9 C 0.015 3.985 10 N -0.849 5.849 11 Si 0.965 3.035 12 H -0.262 1.262 13 H -0.265 1.265 14 H -0.283 1.283 15 S 2.526 3.474 16 O -1.015 7.015 17 O -1.013 7.013 18 C -0.621 4.621 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.125 4.125 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.140 0.860 25 H 0.149 0.851 26 H 0.118 0.882 27 H 0.284 0.716 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -5.781 3.421 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.284 3.716 4 O -0.426 6.426 5 C 0.000 4.000 6 N -0.642 5.642 7 C -0.433 4.433 8 H 0.099 0.901 9 C -0.194 4.194 10 N -0.488 5.488 11 Si 0.788 3.212 12 H -0.187 1.187 13 H -0.189 1.189 14 H -0.209 1.209 15 S 2.632 3.368 16 O -1.006 7.006 17 O -1.003 7.003 18 C -0.730 4.730 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.164 4.164 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.158 0.842 25 H 0.166 0.834 26 H 0.136 0.864 27 H 0.094 0.906 28 H 0.160 0.840 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.194 4.069 7.078 hybrid contribution -0.234 0.561 -1.103 1.259 sum 2.329 -4.633 2.966 5.974 Atomic orbital electron populations 1.23514 0.75625 1.05672 1.01921 1.86499 1.24591 1.32845 1.84260 1.25395 0.93990 0.81236 0.70933 1.90573 1.67710 1.37770 1.46515 1.20983 0.84971 0.85867 1.08204 1.52630 1.71993 1.18885 1.20653 1.19401 1.42650 0.95949 0.85320 0.90141 1.26041 0.93840 0.97162 1.02375 1.69849 1.29461 1.17958 1.31485 0.85367 0.78926 0.78818 0.78053 1.18704 1.18886 1.20863 1.09633 0.79704 0.73673 0.73750 1.93351 1.83490 1.38461 1.85311 1.93350 1.74692 1.70490 1.61772 1.31960 1.26773 1.07855 1.06430 1.22599 0.99784 0.91908 1.00500 1.22757 0.96950 0.94489 1.00601 1.22719 1.00197 1.01246 0.92271 0.92749 0.92634 0.84155 0.83395 0.86435 0.90616 0.83971 0.89324 0.89364 0.88288 0.88896 0.88970 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.87 10.57 -51.41 -0.54 -14.42 16 3 C 0.44 20.48 8.00 71.24 0.57 21.05 16 4 O -0.54 -28.58 16.09 21.98 0.35 -28.23 16 5 C 0.13 5.79 5.48 85.64 0.47 6.26 16 6 N -0.82 -40.56 2.30 -347.16 -0.80 -41.36 16 7 C -0.29 -15.36 9.02 84.03 0.76 -14.60 16 8 H 0.08 4.52 7.37 -2.91 -0.02 4.50 16 9 C 0.01 0.71 4.98 84.86 0.42 1.14 16 10 N -0.85 -39.10 11.26 21.65 0.24 -38.86 16 11 Si 0.96 39.31 29.61 68.60 2.03 41.34 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 14 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 15 S 2.53 120.22 5.26 -56.49 -0.30 119.92 16 16 O -1.02 -56.26 16.98 -127.65 -2.17 -58.43 16 17 O -1.01 -49.93 16.16 -127.65 -2.06 -51.99 16 18 C -0.62 -22.61 4.51 31.12 0.14 -22.47 16 19 C -0.11 -3.33 7.66 31.18 0.24 -3.10 16 20 C -0.11 -2.65 8.09 31.18 0.25 -2.40 16 21 C -0.13 -3.70 7.67 31.12 0.24 -3.46 16 22 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 23 H 0.05 1.64 8.13 -2.38 -0.02 1.62 16 24 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.15 6.64 5.30 -2.38 -0.01 6.62 16 26 H 0.12 4.65 7.45 -2.39 -0.02 4.63 16 27 H 0.28 12.04 8.31 -92.71 -0.77 11.26 16 28 H 0.14 5.24 8.14 -2.39 -0.02 5.22 16 29 H 0.09 2.72 7.57 -2.39 -0.02 2.70 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.40 8.10 -2.39 -0.02 2.39 16 Total: -1.00 -68.29 304.73 2.15 -66.13 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.11 Total: 21.52 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 4.29 Total: -15.63 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.55 Total: -80.22 kcal Atomic # 8 Polarization: -148.65 SS G_CDS: -4.42 Total: -153.06 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: 120.22 SS G_CDS: -0.30 Total: 119.92 kcal Total: -68.29 2.15 -66.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881910169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.551 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds