Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46862 * 172.82135 * 3 2 1 5 5 C 1.36805 * 119.99970 * 263.29532 * 4 3 2 6 6 H 1.07994 * 119.99856 * 358.21497 * 5 4 3 7 7 C 1.39087 * 119.99873 * 178.22015 * 5 4 3 8 8 N 1.31343 * 120.00178 * 89.64040 * 7 5 4 9 9 Si 1.86801 * 119.99665 * 269.64379 * 7 5 4 10 10 H 1.48501 * 109.47334 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47190 * 119.99974 * 9 7 5 12 12 H 1.48502 * 109.46990 * 240.00028 * 9 7 5 13 13 C 1.34773 * 120.00012 * 83.29211 * 4 3 2 14 14 O 1.21626 * 120.00228 * 182.61742 * 13 4 3 15 15 C 1.47540 * 120.00230 * 2.63028 * 13 4 3 16 16 N 1.33082 * 120.17192 * 353.93020 * 15 13 4 17 17 C 1.31740 * 120.00668 * 180.02562 * 16 15 13 18 18 C 1.38817 * 120.36633 * 359.97438 * 17 16 15 19 19 N 1.32030 * 120.35510 * 0.02562 * 18 17 16 20 20 C 1.32878 * 119.98633 * 0.02562 * 19 18 17 21 21 S 1.76199 * 120.18485 * 179.97438 * 20 19 18 22 22 C 1.81005 * 99.99681 * 359.97438 * 21 20 19 23 23 H 4.40639 * 5.51377 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.46734 * 52.82208 * 3 2 1 25 25 H 1.08997 * 109.47102 * 292.82371 * 3 2 1 26 26 H 0.96998 * 119.99588 * 184.91449 * 8 7 5 27 27 H 1.07993 * 119.81676 * 180.27684 * 17 16 15 28 28 H 1.07999 * 119.81972 * 180.02562 * 18 17 16 29 29 H 1.09000 * 109.47153 * 299.99653 * 22 21 20 30 30 H 1.08995 * 109.47050 * 60.00038 * 22 21 20 31 31 H 1.09001 * 109.46780 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3713 -0.1726 5 6 3.4919 1.8185 -1.4149 6 1 3.4425 1.1524 -2.2635 7 6 3.9197 3.1310 -1.5848 8 7 5.1937 3.4271 -1.4657 9 14 2.6821 4.4726 -1.9825 10 1 1.3216 3.8830 -2.0630 11 1 2.7122 5.5056 -0.9161 12 1 3.0289 5.0956 -3.2851 13 6 3.2294 2.1916 0.8924 14 8 3.5888 3.3438 0.7422 15 6 2.8984 1.6920 2.2406 16 7 2.3906 0.4716 2.3957 17 6 2.0958 0.0290 3.6009 18 6 2.3122 0.8288 4.7147 19 7 2.8152 2.0418 4.5774 20 6 3.1168 2.5028 3.3682 21 16 3.7878 4.1210 3.1790 22 6 3.8336 4.6466 4.9105 23 1 -1.0502 -0.0005 -0.0001 24 1 3.0096 -0.6202 -0.8188 25 1 3.0095 -0.3978 0.9472 26 1 5.4832 4.3517 -1.5133 27 1 1.6881 -0.9635 3.7236 28 1 2.0677 0.4569 5.6987 29 1 2.8243 4.6310 5.3218 30 1 4.4685 3.9676 5.4796 31 1 4.2352 5.6580 4.9726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890401716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = 123.256622 kcal Electronic energy + Delta-G solvation = -19327.143428 eV Core-core repulsion = 16318.249327 eV Total energy + Delta-G solvation = -3008.894100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31353 -38.23847 -34.86707 -33.76042 -33.04275 -31.64249 -30.77972 -28.34459 -26.84160 -25.60205 -24.09538 -23.41766 -20.50038 -17.89886 -17.79636 -17.35263 -16.71612 -16.00625 -15.06507 -14.86800 -14.57556 -14.17338 -13.97796 -13.80297 -13.20936 -12.92440 -12.79630 -12.51457 -12.42562 -12.13979 -11.72982 -11.34575 -10.81453 -10.76257 -10.65254 -10.21808 -9.97142 -9.81260 -9.40266 -9.23562 -8.85481 -8.67275 -8.41628 -7.60180 -7.13569 -6.85744 -3.57064 1.03973 1.60400 2.26640 2.94007 3.17905 3.33581 3.44259 3.49052 3.55030 3.80719 4.01752 4.40099 4.65833 4.72092 4.89894 4.96723 5.17804 5.30892 5.56244 5.65926 5.67168 5.84867 5.94751 6.09550 6.23978 6.43663 6.56073 6.89078 7.02582 7.54681 7.74869 8.23596 8.29002 8.32569 8.83265 9.09144 9.76186 10.06833 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.009893 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.367389 B = 2829.640382 C = 4107.960858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.143 4.143 3 C 0.194 3.806 4 N -0.351 5.351 5 C -0.413 4.413 6 H 0.117 0.883 7 C 0.200 3.800 8 N -0.675 5.675 9 Si 0.857 3.143 10 H -0.265 1.265 11 H -0.260 1.260 12 H -0.290 1.290 13 C 0.386 3.614 14 O -0.565 6.565 15 C 0.085 3.915 16 N -0.435 5.435 17 C 0.040 3.960 18 C 0.012 3.988 19 N -0.447 5.447 20 C 0.064 3.936 21 S 0.068 5.932 22 C -0.200 4.200 23 H 0.207 0.793 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.290 0.710 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 -4.089 6.445 8.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.144 4.144 3 C 0.071 3.929 4 N -0.060 5.060 5 C -0.535 4.535 6 H 0.134 0.866 7 C -0.038 4.038 8 N -0.294 5.294 9 Si 0.678 3.322 10 H -0.189 1.189 11 H -0.185 1.185 12 H -0.217 1.217 13 C 0.187 3.813 14 O -0.458 6.458 15 C -0.059 4.059 16 N -0.154 5.154 17 C -0.125 4.125 18 C -0.151 4.151 19 N -0.166 5.166 20 C -0.191 4.191 21 S 0.305 5.695 22 C -0.369 4.369 23 H 0.224 0.776 24 H 0.105 0.895 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.175 0.825 28 H 0.173 0.827 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.483 -2.797 5.447 6.608 hybrid contribution -1.377 -0.365 1.289 1.921 sum -3.860 -3.162 6.736 8.383 Atomic orbital electron populations 1.24564 0.95604 1.01072 1.04607 1.23400 0.94541 0.99345 0.97113 1.19152 0.84129 0.85278 1.04389 1.43852 1.46215 1.09164 1.06799 1.19058 1.50759 0.98342 0.85384 0.86599 1.25062 0.93662 0.98377 0.86693 1.70500 1.18697 1.22820 1.17419 0.87286 0.85383 0.82451 0.77055 1.18876 1.18495 1.21745 1.16578 0.95253 0.87557 0.81916 1.90421 1.59117 1.16827 1.79398 1.22032 0.98303 0.90115 0.95462 1.68854 1.10378 1.12618 1.23542 1.23543 0.98729 1.00878 0.89369 1.23342 1.00418 0.91407 0.99917 1.68648 1.11015 1.14332 1.22595 1.24009 1.02218 1.01448 0.91408 1.87388 1.74991 1.05224 1.01860 1.23851 1.05063 1.04131 1.03813 0.77578 0.89537 0.85157 0.89823 0.82513 0.82678 0.90777 0.90734 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.28 19.25 29.55 0.57 -3.71 16 2 C -0.14 -2.83 12.24 -37.12 -0.45 -3.28 16 3 C 0.19 3.92 5.50 -6.83 -0.04 3.88 16 4 N -0.35 -8.61 2.60 -119.13 -0.31 -8.92 16 5 C -0.41 -10.52 9.48 -15.02 -0.14 -10.66 16 6 H 0.12 2.80 8.00 -52.49 -0.42 2.38 16 7 C 0.20 5.14 3.01 -17.45 -0.05 5.09 16 8 N -0.68 -17.34 13.57 55.50 0.75 -16.58 16 9 Si 0.86 20.57 28.17 -169.99 -4.79 15.78 16 10 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.39 9.96 7.47 -12.47 -0.09 9.86 16 14 O -0.57 -15.58 9.74 5.25 0.05 -15.53 16 15 C 0.08 1.95 6.63 -82.64 -0.55 1.40 16 16 N -0.43 -8.64 5.16 -9.49 -0.05 -8.69 16 17 C 0.04 0.64 11.21 -17.38 -0.19 0.45 16 18 C 0.01 0.19 11.22 -17.25 -0.19 0.00 16 19 N -0.45 -8.63 9.32 -11.46 -0.11 -8.74 16 20 C 0.06 1.39 7.01 -16.21 -0.11 1.28 16 21 S 0.07 1.43 19.64 -107.50 -2.11 -0.68 16 22 C -0.20 -3.26 9.66 101.05 0.98 -2.29 16 23 H 0.21 2.86 7.80 -54.08 -0.42 2.44 16 24 H 0.09 1.57 7.95 -51.93 -0.41 1.15 16 25 H 0.13 2.55 5.22 -52.30 -0.27 2.27 16 26 H 0.29 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.07 1.19 8.13 -51.92 -0.42 0.77 16 30 H 0.07 1.19 8.13 -51.92 -0.42 0.77 16 31 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -30.20 290.03 -5.25 -35.45 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.77 Total: 1.51 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.28 Total: 2.02 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.29 Total: -42.93 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.05 Total: -15.53 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.79 Total: 15.78 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.11 Total: -0.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.20 -5.25 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.708 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds