Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46862 * 172.82135 * 3 2 1 5 5 C 1.36805 * 119.99970 * 263.29532 * 4 3 2 6 6 H 1.07994 * 119.99856 * 358.21497 * 5 4 3 7 7 C 1.39087 * 119.99873 * 178.22015 * 5 4 3 8 8 N 1.31343 * 120.00178 * 89.64040 * 7 5 4 9 9 Si 1.86801 * 119.99665 * 269.64379 * 7 5 4 10 10 H 1.48501 * 109.47334 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47190 * 119.99974 * 9 7 5 12 12 H 1.48502 * 109.46990 * 240.00028 * 9 7 5 13 13 C 1.34773 * 120.00012 * 83.29211 * 4 3 2 14 14 O 1.21626 * 120.00228 * 182.61742 * 13 4 3 15 15 C 1.47540 * 120.00230 * 2.63028 * 13 4 3 16 16 N 1.33082 * 120.17192 * 353.93020 * 15 13 4 17 17 C 1.31740 * 120.00668 * 180.02562 * 16 15 13 18 18 C 1.38817 * 120.36633 * 359.97438 * 17 16 15 19 19 N 1.32030 * 120.35510 * 0.02562 * 18 17 16 20 20 C 1.32878 * 119.98633 * 0.02562 * 19 18 17 21 21 S 1.76199 * 120.18485 * 179.97438 * 20 19 18 22 22 C 1.81005 * 99.99681 * 359.97438 * 21 20 19 23 23 H 4.40639 * 5.51377 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.46734 * 52.82208 * 3 2 1 25 25 H 1.08997 * 109.47102 * 292.82371 * 3 2 1 26 26 H 0.96998 * 119.99588 * 184.91449 * 8 7 5 27 27 H 1.07993 * 119.81676 * 180.27684 * 17 16 15 28 28 H 1.07999 * 119.81972 * 180.02562 * 18 17 16 29 29 H 1.09000 * 109.47153 * 299.99653 * 22 21 20 30 30 H 1.08995 * 109.47050 * 60.00038 * 22 21 20 31 31 H 1.09001 * 109.46780 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3713 -0.1726 5 6 3.4919 1.8185 -1.4149 6 1 3.4425 1.1524 -2.2635 7 6 3.9197 3.1310 -1.5848 8 7 5.1937 3.4271 -1.4657 9 14 2.6821 4.4726 -1.9825 10 1 1.3216 3.8830 -2.0630 11 1 2.7122 5.5056 -0.9161 12 1 3.0289 5.0956 -3.2851 13 6 3.2294 2.1916 0.8924 14 8 3.5888 3.3438 0.7422 15 6 2.8984 1.6920 2.2406 16 7 2.3906 0.4716 2.3957 17 6 2.0958 0.0290 3.6009 18 6 2.3122 0.8288 4.7147 19 7 2.8152 2.0418 4.5774 20 6 3.1168 2.5028 3.3682 21 16 3.7878 4.1210 3.1790 22 6 3.8336 4.6466 4.9105 23 1 -1.0502 -0.0005 -0.0001 24 1 3.0096 -0.6202 -0.8188 25 1 3.0095 -0.3978 0.9472 26 1 5.4832 4.3517 -1.5133 27 1 1.6881 -0.9635 3.7236 28 1 2.0677 0.4569 5.6987 29 1 2.8243 4.6310 5.3218 30 1 4.4685 3.9676 5.4796 31 1 4.2352 5.6580 4.9726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890401716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = 103.754337 kcal Electronic energy + Delta-G solvation = -19327.989110 eV Core-core repulsion = 16318.249327 eV Total energy + Delta-G solvation = -3009.739783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92726 -39.95369 -36.61300 -35.43740 -34.73783 -33.19861 -32.36328 -29.71042 -28.44594 -27.27362 -25.63900 -25.04626 -22.20883 -19.56122 -19.36108 -18.87925 -18.32410 -17.64374 -16.85572 -16.43690 -16.19288 -15.92457 -15.49725 -15.32802 -14.71787 -14.40688 -14.28765 -14.24759 -13.97289 -13.93422 -13.20262 -13.15168 -12.66633 -12.36455 -12.22009 -12.08519 -11.60365 -11.30264 -10.86346 -10.81182 -10.64000 -10.43842 -10.01412 -9.43242 -9.00351 -8.51195 -5.48107 -0.46896 0.08186 0.66897 1.22160 1.49050 1.51454 1.56812 1.81290 2.10569 2.17603 2.21212 2.58089 2.96110 3.04781 3.39521 3.58147 3.69000 3.78979 4.26639 4.30200 4.37210 4.41860 4.45821 4.61174 4.91834 4.97211 5.18788 5.24218 5.42391 5.79407 6.20770 6.51092 6.74611 6.86600 7.09618 7.35946 7.93556 8.23599 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.009893 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.367389 B = 2829.640382 C = 4107.960858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.186 4.186 3 C 0.197 3.803 4 N -0.367 5.367 5 C -0.490 4.490 6 H 0.110 0.890 7 C 0.203 3.797 8 N -0.702 5.702 9 Si 0.877 3.123 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.381 3.619 14 O -0.591 6.591 15 C 0.059 3.941 16 N -0.429 5.429 17 C 0.044 3.956 18 C 0.056 3.944 19 N -0.455 5.455 20 C 0.056 3.944 21 S -0.004 6.004 22 C -0.173 4.173 23 H 0.244 0.756 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.292 0.708 27 H 0.214 0.786 28 H 0.216 0.784 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -5.971 10.563 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.188 4.188 3 C 0.075 3.925 4 N -0.078 5.078 5 C -0.609 4.609 6 H 0.127 0.873 7 C -0.033 4.033 8 N -0.322 5.322 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.179 3.821 14 O -0.483 6.483 15 C -0.085 4.085 16 N -0.147 5.147 17 C -0.122 4.122 18 C -0.110 4.110 19 N -0.173 5.173 20 C -0.194 4.194 21 S 0.235 5.765 22 C -0.341 4.341 23 H 0.260 0.740 24 H 0.111 0.889 25 H 0.153 0.847 26 H 0.104 0.896 27 H 0.230 0.770 28 H 0.232 0.768 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.246 -4.635 9.460 11.357 hybrid contribution -1.023 0.020 0.791 1.293 sum -5.269 -4.615 10.250 12.415 Atomic orbital electron populations 1.25443 0.96459 0.99010 1.02669 1.23578 0.95004 1.01213 0.98960 1.19179 0.84873 0.83679 1.04814 1.43761 1.47557 1.10425 1.06010 1.18782 1.57004 0.98932 0.86137 0.87301 1.25251 0.93531 0.99042 0.85465 1.70581 1.19499 1.23047 1.19068 0.86996 0.84838 0.81365 0.76939 1.20515 1.21303 1.19552 1.17230 0.93996 0.87524 0.83309 1.90398 1.58930 1.18151 1.80862 1.21783 1.00280 0.91816 0.94638 1.68853 1.08843 1.11087 1.25952 1.24566 0.96898 1.02944 0.87836 1.24523 0.94588 0.89296 1.02582 1.68796 1.11536 1.15958 1.21020 1.23947 1.02214 1.01201 0.92019 1.87621 1.75277 1.06532 1.07021 1.23757 1.05750 1.05355 0.99277 0.73984 0.88896 0.84687 0.89617 0.76986 0.76753 0.90150 0.90038 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.29 19.25 74.32 1.43 -5.86 16 2 C -0.19 -7.25 12.24 31.13 0.38 -6.87 16 3 C 0.20 8.11 5.50 84.57 0.47 8.57 16 4 N -0.37 -18.79 2.60 -649.06 -1.69 -20.48 16 5 C -0.49 -26.73 9.48 84.12 0.80 -25.93 16 6 H 0.11 5.77 8.00 -2.91 -0.02 5.75 16 7 C 0.20 11.13 3.01 84.97 0.26 11.39 16 8 N -0.70 -38.38 13.57 21.69 0.29 -38.08 16 9 Si 0.88 44.32 28.17 68.60 1.93 46.26 16 10 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 11 H -0.29 -15.49 7.11 99.48 0.71 -14.79 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.38 20.28 7.47 86.70 0.65 20.92 16 14 O -0.59 -34.09 9.74 -4.11 -0.04 -34.13 16 15 C 0.06 2.65 6.63 41.98 0.28 2.93 16 16 N -0.43 -15.70 5.16 -183.92 -0.95 -16.65 16 17 C 0.04 1.14 11.21 84.85 0.95 2.10 16 18 C 0.06 1.40 11.22 84.80 0.95 2.35 16 19 N -0.45 -15.38 9.32 -190.16 -1.77 -17.16 16 20 C 0.06 2.36 7.01 85.11 0.60 2.96 16 21 S 0.00 -0.17 19.64 -56.49 -1.11 -1.28 16 22 C -0.17 -5.17 9.66 113.37 1.10 -4.08 16 23 H 0.24 5.82 7.80 -4.41 -0.03 5.78 16 24 H 0.09 3.54 7.95 -2.39 -0.02 3.52 16 25 H 0.14 5.21 5.22 -3.13 -0.02 5.19 16 26 H 0.29 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.22 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 30 H 0.08 2.33 8.13 -2.40 -0.02 2.31 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -71.27 290.03 5.67 -65.60 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.15 Total: 7.44 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 7.85 Total: 8.47 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.11 Total: -92.37 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.04 Total: -34.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.93 Total: 46.26 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.11 Total: -1.28 kcal Total: -71.27 5.67 -65.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.355 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds