Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00056 * 2 1 4 4 C 1.50697 * 109.47373 * 270.00297 * 3 2 1 5 5 H 1.08002 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00422 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99871 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47313 * 90.00003 * 8 6 4 10 10 H 1.48499 * 109.47440 * 210.00132 * 8 6 4 11 11 H 1.48502 * 109.46934 * 329.99973 * 8 6 4 12 12 C 1.38556 * 120.00108 * 180.02562 * 2 1 3 13 13 C 1.40256 * 119.18807 * 4.98028 * 12 2 1 14 14 C 1.36253 * 119.75910 * 179.97438 * 13 12 2 15 15 C 1.40928 * 118.24749 * 0.03183 * 14 13 12 16 16 C 1.40480 * 121.35043 * 179.97438 * 15 14 13 17 17 C 1.36852 * 118.13562 * 180.02562 * 16 15 14 18 18 Cl 1.73609 * 120.10221 * 179.97438 * 17 16 15 19 19 C 1.39254 * 119.79404 * 0.02562 * 17 16 15 20 20 N 1.31193 * 121.76687 * 0.27750 * 19 17 16 21 21 C 1.33702 * 121.43451 * 359.43278 * 20 19 17 22 22 N 1.31745 * 119.19372 * 184.99727 * 12 2 1 23 23 H 1.09003 * 109.47004 * 269.99819 * 1 2 3 24 24 H 1.09001 * 109.47154 * 29.99958 * 1 2 3 25 25 H 1.08998 * 109.47186 * 149.99907 * 1 2 3 26 26 H 1.09005 * 109.47177 * 30.00423 * 3 2 1 27 27 H 1.08999 * 109.47213 * 150.00223 * 3 2 1 28 28 H 0.97004 * 120.00306 * 180.02562 * 7 6 4 29 29 H 1.07994 * 120.11847 * 359.97281 * 13 12 2 30 30 H 1.08003 * 120.87421 * 180.02562 * 14 13 12 31 31 H 1.07992 * 120.93009 * 0.05369 * 16 15 14 32 32 H 1.08002 * 119.11456 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7330 3.9292 -0.2529 9 1 5.1066 3.5082 0.1229 10 1 3.7478 5.3560 -0.6642 11 1 2.8271 3.7592 0.9115 12 6 2.1578 -1.1999 -0.0005 13 6 1.4434 -2.4022 -0.1074 14 6 2.1130 -3.5888 -0.1096 15 6 3.5180 -3.5621 -0.0023 16 6 4.2732 -4.7466 0.0026 17 6 5.6336 -4.6441 0.1105 18 17 6.6165 -6.0751 0.1224 19 6 6.2270 -3.3884 0.2118 20 7 5.5154 -2.2862 0.2125 21 6 4.1831 -2.3163 0.1045 22 7 3.4714 -1.1836 0.0997 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1384 0.5138 28 1 3.8224 4.0834 -3.0899 29 1 0.3666 -2.3873 -0.1875 30 1 1.5811 -4.5252 -0.1914 31 1 3.7938 -5.7110 -0.0770 32 1 7.3015 -3.3202 0.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891401768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = 81.968374 kcal Electronic energy + Delta-G solvation = -18400.237595 eV Core-core repulsion = 15387.509396 eV Total energy + Delta-G solvation = -3012.728200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86197 -38.41055 -36.62113 -35.42691 -33.64857 -32.57216 -30.94788 -29.86445 -28.48373 -25.95525 -24.46341 -23.09726 -22.50759 -20.87379 -18.49170 -17.34676 -17.17333 -16.93223 -15.63857 -15.22704 -14.92724 -14.42748 -14.28768 -13.99805 -13.59556 -13.16448 -13.14307 -12.66424 -12.43252 -12.15515 -11.82991 -11.56367 -11.49797 -11.25424 -10.99242 -10.73038 -10.50165 -10.15025 -9.97026 -9.56281 -8.99161 -8.73266 -8.61474 -8.52529 -7.03690 -6.08509 -4.07655 0.46793 0.92709 2.04953 2.16651 3.04740 3.30024 3.35275 3.39647 3.43920 4.26901 4.40894 4.46202 4.62847 4.72113 4.82964 4.85098 5.13439 5.24989 5.33496 5.49913 5.64625 5.70673 5.76963 5.93528 6.02363 6.15515 6.24008 6.60046 6.63777 6.94637 7.45096 7.58059 7.79013 7.98238 8.47718 8.76602 8.93651 9.51189 11.04798 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004866 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.401978 B = 5753.151912 C = 6643.445622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.569 5.569 3 C 0.218 3.782 4 C -0.528 4.528 5 H 0.072 0.928 6 C 0.075 3.925 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.459 3.541 13 C -0.214 4.214 14 C -0.019 4.019 15 C -0.208 4.208 16 C -0.012 4.012 17 C -0.137 4.137 18 Cl -0.071 7.071 19 C 0.177 3.823 20 N -0.462 5.462 21 C 0.372 3.628 22 N -0.526 5.526 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -16.953 7.669 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.276 5.276 3 C 0.097 3.903 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.127 4.127 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.207 3.793 13 C -0.237 4.237 14 C -0.044 4.044 15 C -0.217 4.217 16 C -0.038 4.038 17 C -0.167 4.167 18 Cl -0.042 7.042 19 C 0.000 4.000 20 N -0.172 5.172 21 C 0.130 3.870 22 N -0.248 5.248 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.551 -15.004 7.701 16.936 hybrid contribution -0.336 -1.061 0.289 1.150 sum -1.887 -16.065 7.990 18.042 Atomic orbital electron populations 1.21764 0.79269 1.03416 1.00852 1.46882 1.05129 1.04276 1.71303 1.19823 0.92762 0.79079 0.98592 1.21262 1.37226 1.07165 0.91012 0.90947 1.24814 0.95083 0.97306 0.95547 1.69893 1.41398 1.23574 1.18699 0.86854 0.80392 0.79634 0.82832 1.19636 1.21162 1.19157 1.18462 0.87816 0.86313 0.86710 1.21553 1.01583 0.92106 1.08478 1.21069 0.91935 0.98261 0.93177 1.19318 0.95516 0.94661 1.12189 1.21185 0.91771 0.98211 0.92676 1.21557 0.92575 0.89201 1.13391 1.98347 1.70406 1.38102 1.97364 1.22904 1.00505 0.85180 0.91399 1.67781 1.05889 1.29125 1.14417 1.19026 0.89757 0.86756 0.91505 1.67211 1.05325 1.27627 1.24685 0.93203 0.89927 0.91739 0.95290 0.93346 0.92545 0.84128 0.84290 0.84043 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.26 59.85 0.61 1.93 16 2 N -0.57 -11.40 2.96 -183.06 -0.54 -11.94 16 3 C 0.22 5.24 4.28 -5.20 -0.02 5.22 16 4 C -0.53 -15.01 9.94 -34.44 -0.34 -15.36 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.46 9.01 7.37 -155.58 -1.15 7.86 16 13 C -0.21 -3.12 9.18 -39.54 -0.36 -3.48 16 14 C -0.02 -0.24 9.88 -39.28 -0.39 -0.63 16 15 C -0.21 -3.22 5.74 -106.74 -0.61 -3.83 16 16 C -0.01 -0.14 9.67 -39.24 -0.38 -0.52 16 17 C -0.14 -1.75 6.30 -39.71 -0.25 -2.00 16 18 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 19 C 0.18 2.59 10.94 -17.45 -0.19 2.40 16 20 N -0.46 -8.91 10.43 -12.61 -0.13 -9.04 16 21 C 0.37 7.38 7.62 -157.79 -1.20 6.17 16 22 N -0.53 -11.81 9.08 -11.86 -0.11 -11.92 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.06 0.76 5.92 -51.93 -0.31 0.45 16 26 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 27 H 0.05 1.25 6.69 -51.93 -0.35 0.90 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.14 1.57 5.95 -52.49 -0.31 1.26 16 30 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -34.25 292.70 -9.19 -43.44 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.04 Total: -2.63 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -4.38 Total: -0.16 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.01 Total: -59.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.25 -9.19 -43.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.403 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds