Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00056 * 2 1 4 4 C 1.50697 * 109.47373 * 270.00297 * 3 2 1 5 5 H 1.08002 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00422 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99871 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47313 * 90.00003 * 8 6 4 10 10 H 1.48499 * 109.47440 * 210.00132 * 8 6 4 11 11 H 1.48502 * 109.46934 * 329.99973 * 8 6 4 12 12 C 1.38556 * 120.00108 * 180.02562 * 2 1 3 13 13 C 1.40256 * 119.18807 * 4.98028 * 12 2 1 14 14 C 1.36253 * 119.75910 * 179.97438 * 13 12 2 15 15 C 1.40928 * 118.24749 * 0.03183 * 14 13 12 16 16 C 1.40480 * 121.35043 * 179.97438 * 15 14 13 17 17 C 1.36852 * 118.13562 * 180.02562 * 16 15 14 18 18 Cl 1.73609 * 120.10221 * 179.97438 * 17 16 15 19 19 C 1.39254 * 119.79404 * 0.02562 * 17 16 15 20 20 N 1.31193 * 121.76687 * 0.27750 * 19 17 16 21 21 C 1.33702 * 121.43451 * 359.43278 * 20 19 17 22 22 N 1.31745 * 119.19372 * 184.99727 * 12 2 1 23 23 H 1.09003 * 109.47004 * 269.99819 * 1 2 3 24 24 H 1.09001 * 109.47154 * 29.99958 * 1 2 3 25 25 H 1.08998 * 109.47186 * 149.99907 * 1 2 3 26 26 H 1.09005 * 109.47177 * 30.00423 * 3 2 1 27 27 H 1.08999 * 109.47213 * 150.00223 * 3 2 1 28 28 H 0.97004 * 120.00306 * 180.02562 * 7 6 4 29 29 H 1.07994 * 120.11847 * 359.97281 * 13 12 2 30 30 H 1.08003 * 120.87421 * 180.02562 * 14 13 12 31 31 H 1.07992 * 120.93009 * 0.05369 * 16 15 14 32 32 H 1.08002 * 119.11456 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7330 3.9292 -0.2529 9 1 5.1066 3.5082 0.1229 10 1 3.7478 5.3560 -0.6642 11 1 2.8271 3.7592 0.9115 12 6 2.1578 -1.1999 -0.0005 13 6 1.4434 -2.4022 -0.1074 14 6 2.1130 -3.5888 -0.1096 15 6 3.5180 -3.5621 -0.0023 16 6 4.2732 -4.7466 0.0026 17 6 5.6336 -4.6441 0.1105 18 17 6.6165 -6.0751 0.1224 19 6 6.2270 -3.3884 0.2118 20 7 5.5154 -2.2862 0.2125 21 6 4.1831 -2.3163 0.1045 22 7 3.4714 -1.1836 0.0997 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1384 0.5138 28 1 3.8224 4.0834 -3.0899 29 1 0.3666 -2.3873 -0.1875 30 1 1.5811 -4.5252 -0.1914 31 1 3.7938 -5.7110 -0.0770 32 1 7.3015 -3.3202 0.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891401768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = 59.392526 kcal Electronic energy + Delta-G solvation = -18401.216557 eV Core-core repulsion = 15387.509396 eV Total energy + Delta-G solvation = -3013.707162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06621 -39.67244 -37.65014 -36.76800 -34.84869 -34.67663 -32.16836 -31.21800 -30.12604 -27.28100 -25.80479 -24.58689 -23.73832 -22.38424 -19.68734 -19.11384 -18.60015 -18.32986 -16.92574 -16.64187 -16.32560 -15.98212 -15.49458 -15.36236 -14.91250 -14.63924 -14.20128 -14.14573 -13.73302 -13.52335 -13.35846 -13.07718 -12.66259 -12.62494 -12.44149 -12.17724 -12.09850 -11.82489 -11.69515 -11.21497 -10.82412 -10.31728 -9.86498 -9.83082 -8.44683 -8.33445 -6.37388 -0.60134 -0.26806 1.04485 1.05062 1.30481 1.36805 1.42971 1.86218 2.10984 2.30627 3.01675 3.04453 3.20231 3.58906 3.68500 3.78280 3.81319 4.03778 4.28394 4.42216 4.58698 4.64502 4.67347 4.78734 4.89237 4.94993 4.98606 5.10996 5.24605 5.46051 5.52734 5.92038 6.20253 6.44506 6.63183 6.72510 7.25401 7.50595 8.83188 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004866 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.401978 B = 5753.151912 C = 6643.445622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.590 5.590 3 C 0.233 3.767 4 C -0.526 4.526 5 H 0.026 0.974 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.240 1.240 12 C 0.435 3.565 13 C -0.219 4.219 14 C 0.003 3.997 15 C -0.214 4.214 16 C 0.004 3.996 17 C -0.134 4.134 18 Cl -0.043 7.043 19 C 0.174 3.826 20 N -0.519 5.519 21 C 0.333 3.667 22 N -0.593 5.593 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.025 0.975 28 H 0.267 0.733 29 H 0.179 0.821 30 H 0.199 0.801 31 H 0.188 0.812 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -20.057 9.211 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.299 5.299 3 C 0.110 3.890 4 C -0.565 4.565 5 H 0.044 0.956 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.163 1.163 12 C 0.185 3.815 13 C -0.241 4.241 14 C -0.022 4.022 15 C -0.222 4.222 16 C -0.022 4.022 17 C -0.165 4.165 18 Cl -0.015 7.015 19 C -0.001 4.001 20 N -0.231 5.231 21 C 0.092 3.908 22 N -0.317 5.317 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.196 0.804 30 H 0.216 0.784 31 H 0.206 0.794 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.758 -18.172 9.257 20.579 hybrid contribution 0.176 -0.357 -0.247 0.468 sum -2.582 -18.528 9.010 20.764 Atomic orbital electron populations 1.22008 0.76305 1.04236 1.02889 1.46863 1.06831 1.03104 1.73119 1.19313 0.92762 0.81787 0.95127 1.21517 1.36301 1.06332 0.92317 0.95594 1.25771 0.95365 0.98991 0.98344 1.70047 1.43022 1.24526 1.21198 0.85750 0.79481 0.77807 0.80072 1.20616 1.20003 1.16278 1.18998 0.87650 0.87727 0.87146 1.21830 1.03230 0.90532 1.08547 1.21704 0.90705 0.99924 0.89893 1.19568 0.97134 0.93889 1.11631 1.21626 0.91408 0.98929 0.90272 1.21585 0.93330 0.89462 1.12078 1.98363 1.69788 1.36135 1.97185 1.23312 1.01309 0.85305 0.90172 1.67672 1.06785 1.31776 1.16861 1.19309 0.90128 0.87978 0.93376 1.66988 1.07426 1.30461 1.26819 0.90387 0.91325 0.88750 0.93869 0.95670 0.92403 0.80389 0.78426 0.79439 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.42 10.26 127.77 1.31 3.73 16 2 N -0.59 -23.93 2.96 -733.08 -2.17 -26.10 16 3 C 0.23 11.54 4.28 85.63 0.37 11.91 16 4 C -0.53 -31.43 9.94 25.60 0.25 -31.18 16 5 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 6 C 0.01 0.78 5.47 84.65 0.46 1.25 16 7 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 8 Si 0.95 46.20 27.47 68.60 1.88 48.09 16 9 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 12 C 0.44 17.22 7.37 133.68 0.99 18.20 16 13 C -0.22 -5.82 9.18 22.30 0.20 -5.62 16 14 C 0.00 0.06 9.88 22.47 0.22 0.28 16 15 C -0.21 -6.14 5.74 -21.24 -0.12 -6.26 16 16 C 0.00 0.09 9.67 22.49 0.22 0.30 16 17 C -0.13 -3.09 6.30 22.19 0.14 -2.95 16 18 Cl -0.04 -0.78 28.96 -2.72 -0.08 -0.85 16 19 C 0.17 5.04 10.94 85.03 0.93 5.97 16 20 N -0.52 -20.78 10.43 -193.80 -2.02 -22.80 16 21 C 0.33 13.49 7.62 134.99 1.03 14.51 16 22 N -0.59 -27.78 9.08 -191.42 -1.74 -29.52 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 25 H 0.09 1.97 5.92 -2.39 -0.01 1.96 16 26 H 0.04 1.99 7.13 -2.38 -0.02 1.97 16 27 H 0.03 1.36 6.69 -2.39 -0.02 1.35 16 28 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 29 H 0.18 3.20 5.95 -2.91 -0.02 3.19 16 30 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -83.11 292.70 3.27 -79.84 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.10 Total: 2.17 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.00 Total: 10.15 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -5.63 Total: -139.39 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.09 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.85 kcal Total: -83.11 3.27 -79.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.230 kcal (2) G-P(sol) polarization free energy of solvation -83.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds