Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48495 * 109.47272 * 239.99875 * 3 2 1 5 5 H 1.48502 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47425 * 119.99478 * 3 2 1 7 7 C 1.37877 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99615 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47120 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.42093 * 110.54692 * 68.37385 * 11 10 9 13 13 O 1.42107 * 110.54146 * 291.62203 * 11 10 9 14 14 N 1.65601 * 104.45175 * 180.02562 * 11 10 9 15 15 C 1.34779 * 120.00113 * 64.99392 * 14 11 10 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 11 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 11 18 18 O 1.42905 * 109.46972 * 180.02562 * 17 15 14 19 19 C 1.42899 * 113.99778 * 180.02562 * 18 17 15 20 20 C 1.52997 * 117.49619 * 218.61866 * 19 18 17 21 21 C 1.52994 * 60.00066 * 252.50870 * 20 19 18 22 22 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46971 * 60.00317 * 9 7 2 24 24 H 1.09000 * 109.47498 * 299.99873 * 9 7 2 25 25 H 1.08998 * 109.47494 * 60.00228 * 10 9 7 26 26 H 1.09006 * 109.47230 * 300.00141 * 10 9 7 27 27 H 0.96996 * 120.00042 * 245.00214 * 14 11 10 28 28 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 29 29 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 30 30 H 1.08993 * 115.55216 * 4.32956 * 19 18 17 31 31 H 1.08997 * 117.50274 * 0.02562 * 20 19 18 32 32 H 1.09006 * 117.49745 * 145.01842 * 20 19 18 33 33 H 1.08997 * 117.50498 * 252.50952 * 21 20 19 34 34 H 1.09004 * 117.51701 * 107.48047 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 16 1.3384 -5.2330 0.0011 12 8 0.6658 -5.4200 -1.2365 13 8 0.6631 -5.4195 1.2374 14 7 2.5206 -6.3927 0.0033 15 6 3.3456 -6.5120 1.0624 16 8 3.2219 -5.7703 2.0140 17 6 4.4218 -7.5670 1.0641 18 8 5.1583 -7.4940 2.2865 19 6 6.2092 -8.4568 2.3902 20 6 6.4419 -9.1039 3.7569 21 6 7.4379 -8.0751 3.2181 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8728 -3.6047 -0.8877 27 1 2.6194 -6.9860 -0.7577 28 1 5.0951 -7.4005 0.2233 29 1 3.9647 -8.5524 0.9741 30 1 6.3698 -9.0744 1.5067 31 1 5.7933 -8.7956 4.5769 32 1 6.7556 -10.1477 3.7727 33 1 8.4068 -8.4418 2.8794 34 1 7.4449 -7.0893 3.6834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892933469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = -127.372168 kcal Electronic energy + Delta-G solvation = -19319.900008 eV Core-core repulsion = 15960.536157 eV Total energy + Delta-G solvation = -3359.363851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22137 -38.56134 -36.72925 -35.64719 -35.18830 -34.51394 -33.89141 -31.18134 -28.49069 -25.61888 -22.71254 -22.36670 -22.06779 -21.59400 -19.45686 -18.11120 -17.71687 -17.26413 -16.56832 -16.33826 -15.55288 -15.44927 -15.03823 -14.63476 -14.50946 -14.24573 -13.86642 -13.43198 -12.54946 -12.41952 -12.25152 -11.91314 -11.81738 -11.76496 -11.74223 -11.63673 -11.06423 -11.00630 -10.89877 -10.85196 -10.41908 -10.38019 -10.20447 -9.70735 -9.53335 -9.18995 -8.48454 -6.11028 -4.16599 0.45117 2.00081 2.44644 3.20537 3.29615 3.34054 3.36350 3.48771 3.98012 4.14398 4.38591 4.41979 4.57508 4.60499 4.64919 4.82468 4.84579 4.91838 5.09845 5.24185 5.32748 5.58273 5.61235 5.71973 5.83668 6.43820 6.51483 6.76640 7.28661 7.35589 7.42960 7.81850 8.17602 8.86117 9.47891 11.00086 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.004168 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.609780 B = 6716.541249 C = 7740.981334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.566 3.434 12 O -0.953 6.953 13 O -0.936 6.936 14 N -1.057 6.057 15 C 0.532 3.468 16 O -0.465 6.465 17 C 0.045 3.955 18 O -0.331 6.331 19 C 0.011 3.989 20 C -0.187 4.187 21 C -0.181 4.181 22 H 0.266 0.734 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.428 0.572 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -19.323 -0.108 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.943 6.943 13 O -0.927 6.927 14 N -0.820 5.820 15 C 0.316 3.684 16 O -0.334 6.334 17 C -0.037 4.037 18 O -0.248 6.248 19 C -0.048 4.048 20 C -0.224 4.224 21 C -0.218 4.218 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.263 0.737 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.051 -18.766 0.794 22.316 hybrid contribution 1.114 0.646 -0.667 1.450 sum 13.165 -18.119 0.128 22.397 Atomic orbital electron populations 1.69944 1.06114 1.27360 1.49460 1.25065 0.94998 0.99550 0.94837 0.86495 0.79467 0.82373 0.78737 1.20076 1.21064 1.20009 1.20943 0.93092 0.89592 1.52342 0.91989 1.18992 0.92621 0.90294 0.99057 1.30340 1.13726 1.16055 1.10842 1.06747 0.74916 0.77239 0.74486 1.93592 1.70397 1.85300 1.45025 1.93605 1.70156 1.84308 1.44591 1.55429 1.49299 1.50672 1.26593 1.20173 0.81724 0.85086 0.81423 1.90954 1.68423 1.42006 1.32024 1.22372 0.93621 0.98329 0.89356 1.87998 1.45785 1.54924 1.36123 1.22739 0.91011 0.95143 0.95870 1.23419 1.02864 0.98326 0.97841 1.23367 0.93798 1.01063 1.03572 0.92442 0.94715 0.94536 0.85008 0.85977 0.73680 0.88900 0.89073 0.86799 0.87851 0.88110 0.88002 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 10 C -0.57 -11.46 5.82 37.16 0.22 -11.25 16 11 S 2.57 46.35 5.11 -107.50 -0.55 45.80 16 12 O -0.95 -18.53 18.08 -57.54 -1.04 -19.57 16 13 O -0.94 -20.70 17.04 -64.80 -1.10 -21.80 16 14 N -1.06 -12.86 5.60 31.22 0.17 -12.68 16 15 C 0.53 7.16 7.64 -10.99 -0.08 7.08 16 16 O -0.47 -8.68 14.60 -22.97 -0.34 -9.02 16 17 C 0.04 0.40 6.29 36.01 0.23 0.62 16 18 O -0.33 -3.90 10.13 -55.14 -0.56 -4.45 16 19 C 0.01 0.09 6.44 -26.73 -0.17 -0.09 16 20 C -0.19 -1.40 10.48 -26.74 -0.28 -1.68 16 21 C -0.18 -1.37 10.48 -26.74 -0.28 -1.65 16 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.13 2.62 7.19 -51.93 -0.37 2.25 16 26 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 27 H 0.43 3.11 8.79 -34.47 -0.30 2.81 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -38.52 314.64 -8.31 -46.83 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.43 Total: -0.57 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.92 Total: -19.74 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.91 Total: -38.71 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -3.04 Total: -54.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.55 Total: 45.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -38.52 -8.31 -46.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892933469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.541 kcal (2) G-P(sol) polarization free energy of solvation -38.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds