Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36479 * 126.98074 * 2 1 4 4 C 1.48449 * 126.90523 * 359.94910 * 3 2 1 5 5 C 1.39316 * 120.10516 * 40.96694 * 4 3 2 6 6 C 1.38007 * 119.89184 * 179.72553 * 5 4 3 7 7 C 1.38434 * 120.10460 * 0.54873 * 6 5 4 8 8 Cl 1.73605 * 119.89223 * 179.74403 * 7 6 5 9 9 C 1.38429 * 120.21227 * 359.72513 * 7 6 5 10 10 C 1.38005 * 120.10486 * 359.97438 * 9 7 6 11 11 N 1.34506 * 106.19273 * 179.97438 * 3 2 1 12 12 N 1.28620 * 108.78414 * 359.73944 * 11 3 2 13 13 N 1.28652 * 110.48138 * 0.44262 * 12 11 3 14 14 C 1.46502 * 125.75161 * 179.82252 * 13 12 11 15 15 C 1.50703 * 109.46893 * 269.69476 * 14 13 12 16 16 H 1.08001 * 120.00197 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99771 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00398 * 359.71481 * 17 15 14 19 19 Si 1.86804 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 179.71990 * 19 17 15 21 21 H 1.48496 * 109.47054 * 299.71717 * 19 17 15 22 22 H 1.48500 * 109.47349 * 59.72471 * 19 17 15 23 23 H 1.09005 * 109.47236 * 275.07360 * 1 2 3 24 24 H 1.09000 * 109.47083 * 35.07293 * 1 2 3 25 25 H 1.09002 * 109.47479 * 155.07307 * 1 2 3 26 26 H 1.07992 * 120.05447 * 359.97438 * 5 4 3 27 27 H 1.07997 * 119.95029 * 180.27137 * 6 5 4 28 28 H 1.07999 * 119.94581 * 179.97438 * 9 7 6 29 29 H 1.08005 * 120.05205 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47240 * 149.69123 * 14 13 12 31 31 H 1.09003 * 109.46912 * 29.69106 * 14 13 12 32 32 H 0.96997 * 119.99633 * 0.28768 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3280 1.0902 0.0000 4 6 1.9160 2.5164 -0.0011 5 6 0.8471 2.9356 0.7881 6 6 0.4714 4.2635 0.7881 7 6 1.1475 5.1764 -0.0030 8 17 0.6660 6.8443 -0.0039 9 6 2.2065 4.7636 -0.7932 10 6 2.5935 3.4389 -0.7952 11 7 3.5855 0.6129 0.0006 12 7 3.5405 -0.6725 0.0064 13 7 2.3203 -1.0803 0.0005 14 6 1.8853 -2.4793 0.0007 15 6 1.7368 -2.9593 -1.4201 16 1 1.9451 -2.2892 -2.2411 17 6 1.3339 -4.2536 -1.6718 18 7 1.0846 -5.0710 -0.6722 19 14 1.1490 -4.8483 -3.4330 20 1 0.7142 -6.2682 -3.4328 21 1 0.1336 -4.0198 -4.1312 22 1 2.4523 -4.7300 -4.1348 23 1 -0.3634 0.0909 1.0237 24 1 -0.3633 0.8411 -0.5905 25 1 -0.3634 -0.9319 -0.4331 26 1 0.3161 2.2233 1.4020 27 1 -0.3542 4.5903 1.4029 28 1 2.7307 5.4794 -1.4091 29 1 3.4202 3.1179 -1.4117 30 1 0.9275 -2.5618 0.5142 31 1 2.6272 -3.0903 0.5150 32 1 1.1802 -4.7620 0.2423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899888159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = 92.575472 kcal Electronic energy + Delta-G solvation = -18153.743611 eV Core-core repulsion = 15141.475369 eV Total energy + Delta-G solvation = -3012.268241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.63641 -39.20435 -36.60567 -34.88686 -33.09160 -32.75966 -31.16586 -30.05691 -27.57535 -26.82693 -23.77098 -23.31160 -22.78009 -20.67333 -20.19187 -17.69610 -17.25808 -16.38428 -15.68871 -15.43502 -14.96994 -14.02198 -13.94940 -13.77996 -13.63131 -13.44705 -13.03816 -12.84318 -12.62007 -12.02406 -11.86177 -11.72817 -11.64521 -11.30693 -11.01963 -10.92410 -10.89914 -10.38823 -10.28383 -10.02128 -9.15457 -9.13969 -8.79557 -8.78916 -8.07772 -6.82218 -4.60400 0.90164 1.22215 1.99981 2.25263 2.92705 3.20096 3.25950 3.28677 3.47049 3.66381 4.23825 4.52853 4.71587 4.77966 4.93497 5.02812 5.18349 5.24439 5.34097 5.53949 5.66221 5.72968 5.87052 5.93635 6.02018 6.10965 6.16344 6.33128 6.47715 6.56726 6.67180 6.81205 7.25868 7.34350 7.99599 8.33476 9.08363 9.12332 10.56282 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.033623 B = 0.003605 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.554873 B = 7765.977172 C = 7889.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.022 4.022 4 C 0.027 3.973 5 C -0.097 4.097 6 C -0.108 4.108 7 C -0.040 4.040 8 Cl -0.079 7.079 9 C -0.108 4.108 10 C -0.084 4.084 11 N -0.277 5.277 12 N -0.084 5.084 13 N -0.244 5.244 14 C 0.230 3.770 15 C -0.624 4.624 16 H 0.062 0.938 17 C 0.032 3.968 18 N -0.893 5.893 19 Si 1.076 2.924 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 17.005 2.064 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C -0.161 4.161 4 C 0.025 3.975 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.067 4.067 8 Cl -0.051 7.051 9 C -0.127 4.127 10 C -0.104 4.104 11 N -0.141 5.141 12 N -0.063 5.063 13 N -0.036 5.036 14 C 0.112 3.888 15 C -0.662 4.662 16 H 0.080 0.920 17 C -0.174 4.174 18 N -0.527 5.527 19 Si 0.902 3.098 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.107 15.297 1.169 15.653 hybrid contribution -0.634 1.570 0.941 1.937 sum -3.741 16.867 2.110 17.406 Atomic orbital electron populations 1.20358 0.86481 1.04666 1.02612 1.22028 0.96251 0.86569 1.08182 1.19928 0.90359 0.92644 1.13135 1.17747 0.94820 0.89143 0.95827 1.21150 0.96699 0.95144 0.98609 1.20906 1.00301 0.92238 0.99234 1.20946 0.98880 0.85288 1.01562 1.98357 1.91398 1.17419 1.97883 1.20963 0.96272 0.96289 0.99190 1.21198 0.99431 0.91557 0.98167 1.75217 1.19890 1.01339 1.17702 1.78173 1.02587 1.05756 1.19804 1.47690 1.03902 1.10083 1.41917 1.20166 0.96595 0.71069 1.00969 1.22021 1.53124 1.00994 0.90073 0.91965 1.25954 0.92547 0.92230 1.06681 1.70859 1.43931 1.37772 1.00166 0.83418 0.77050 0.76567 0.72747 1.20214 1.20955 1.20926 0.90736 0.90031 0.89602 0.84786 0.84796 0.84836 0.84616 0.93000 0.92672 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 8.61 36.01 0.31 -0.91 16 2 C 0.01 0.10 6.99 -81.73 -0.57 -0.47 16 3 C -0.02 -0.41 6.71 -83.12 -0.56 -0.97 16 4 C 0.03 0.40 5.75 -104.89 -0.60 -0.20 16 5 C -0.10 -1.18 8.83 -39.27 -0.35 -1.53 16 6 C -0.11 -1.16 9.81 -39.59 -0.39 -1.55 16 7 C -0.04 -0.45 6.32 -39.44 -0.25 -0.69 16 8 Cl -0.08 -0.80 28.95 -51.86 -1.50 -2.30 16 9 C -0.11 -1.24 9.81 -39.60 -0.39 -1.63 16 10 C -0.08 -1.14 9.78 -39.27 -0.38 -1.52 16 11 N -0.28 -5.95 12.44 33.06 0.41 -5.54 16 12 N -0.08 -1.97 13.14 60.35 0.79 -1.17 16 13 N -0.24 -5.43 3.32 -57.95 -0.19 -5.63 16 14 C 0.23 5.41 5.05 -5.19 -0.03 5.38 16 15 C -0.62 -16.28 9.39 -34.44 -0.32 -16.60 16 16 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 18 N -0.89 -24.43 13.65 55.43 0.76 -23.67 16 19 Si 1.08 23.35 29.90 -169.99 -5.08 18.26 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 24 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 25 H 0.09 1.39 7.57 -51.93 -0.39 1.00 16 26 H 0.13 1.44 7.01 -52.49 -0.37 1.08 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.05 1.16 7.47 -51.93 -0.39 0.77 16 31 H 0.06 1.35 8.00 -51.93 -0.42 0.94 16 32 H 0.27 7.17 7.22 -40.82 -0.29 6.88 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -29.02 300.16 -7.07 -36.09 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.15 Total: -0.62 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.63 Total: -19.94 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.77 Total: -36.01 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.08 Total: 18.26 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.02 -7.07 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899888159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.664 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds